| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622241
Identifier: 167622241
GI number: 167622241
Start: 360798
End: 361289
Strand: Direct
Name: 167622241
Synonym: Shal_0300
Alternate gene names: NA
Gene position: 360798-361289 (Clockwise)
Preceding gene: 167622239
Following gene: 167622242
Centisome position: 6.9
GC content: 37.8
Gene sequence:
>492_bases ATGAGTGCATCTGTAATGTTAAGTTATGCTTTCATGTACTTTGTATTGTTCCTTGTGGTGCCATTTGTATTGGCAACATT TGCAATGACATGTATAAAATTCTTTAAATCAACTGAATTTGTAGCATCAAATATCAAATTGAAGCCAAACTCGTTGGGAG ATCAATCTGTCAGCTTTATCAATAAATTAAACGACTTGGTTGTGGGTAAATACAATGTGCTATACGGCACAACATTAGAT AGCCTTTGTGACGTTGATAAGAATGAAAAAGAGCAAGATGCTCATAGCTACCTGCAGGGTTGCCATCTTGATTATGTATT AGTGGATAGTGAGTCTTCAGCCGTAAAACTCGTTATTACAGACCCGCAGCATAACTCTGAAGAGAACAACAGATTCATCG ACGATACACTAGCCAAAATGGGTGTGAAAGTACTTCACTTAGCCAAGAATGACTGCGATGCAAACCTGATCAAAAGCTCG TTAGTCGCATAA
Upstream 100 bases:
>100_bases ATAATTGATTTGTATCAATGTTTGGGGCTGCTTTAATAACAATACTGATTGGGCGTTAAAAAAAACTATTAATAATTAAA ATGTAAGTTTGGAGGTCGTT
Downstream 100 bases:
>100_bases TGTCAATAGGTGTTGCAACATCAGTTGCAACACCTCAATCCCCAACCCTCTTTATTTATCACTTAGTAATGTGAGGACAC CCCATGTCCAGCCTATTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSASVMLSYAFMYFVLFLVVPFVLATFAMTCIKFFKSTEFVASNIKLKPNSLGDQSVSFINKLNDLVVGKYNVLYGTTLD SLCDVDKNEKEQDAHSYLQGCHLDYVLVDSESSAVKLVITDPQHNSEENNRFIDDTLAKMGVKVLHLAKNDCDANLIKSS LVA
Sequences:
>Translated_163_residues MSASVMLSYAFMYFVLFLVVPFVLATFAMTCIKFFKSTEFVASNIKLKPNSLGDQSVSFINKLNDLVVGKYNVLYGTTLD SLCDVDKNEKEQDAHSYLQGCHLDYVLVDSESSAVKLVITDPQHNSEENNRFIDDTLAKMGVKVLHLAKNDCDANLIKSS LVA >Mature_162_residues SASVMLSYAFMYFVLFLVVPFVLATFAMTCIKFFKSTEFVASNIKLKPNSLGDQSVSFINKLNDLVVGKYNVLYGTTLDS LCDVDKNEKEQDAHSYLQGCHLDYVLVDSESSAVKLVITDPQHNSEENNRFIDDTLAKMGVKVLHLAKNDCDANLIKSSL VA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18133; Mature: 18002
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASVMLSYAFMYFVLFLVVPFVLATFAMTCIKFFKSTEFVASNIKLKPNSLGDQSVSFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHH NKLNDLVVGKYNVLYGTTLDSLCDVDKNEKEQDAHSYLQGCHLDYVLVDSESSAVKLVIT HHHHHHHHCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEE DPQHNSEENNRFIDDTLAKMGVKVLHLAKNDCDANLIKSSLVA CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure SASVMLSYAFMYFVLFLVVPFVLATFAMTCIKFFKSTEFVASNIKLKPNSLGDQSVSFI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHH NKLNDLVVGKYNVLYGTTLDSLCDVDKNEKEQDAHSYLQGCHLDYVLVDSESSAVKLVIT HHHHHHHHCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEE DPQHNSEENNRFIDDTLAKMGVKVLHLAKNDCDANLIKSSLVA CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA