Click here to switch to the map view.

The map label for this gene is torC [H]

Identifier: 167622225

GI number: 167622225

Start: 341012

End: 341575

Strand: Direct

Name: torC [H]

Synonym: Shal_0284

Alternate gene names: 167622225

Gene position: 341012-341575 (Clockwise)

Preceding gene: 167622218

Following gene: 167622228

Centisome position: 6.52

GC content: 42.73

Gene sequence:

>564_bases
ATGAACTGGCGAGCACTATTTAAACCTAGCGCAAAATATTCGATTCTGGCATTACTAGTTGTCGGTATCGTTGTCGGTGT
TGTTGGCTACTTTGCTACACAGCAAACTTTACACGCTACGAGTACAGATGAGTTCTGTATGAGCTGTCACAGCAACCACT
CATTGAAAGATGAAGTGCTAGCTTCACCTCATGGCGGTAATAGCTTTGGTGTTACGGTACAATGTCAAGATTGTCACCTT
CCACACAACCCAGTTAAATACCTAATTAAGAAGATCGTTGTATCTAAAGATCTATACGGCTACTTAACTATCGACGGTTT
CAACACTCAAGAGTGGTTGGATGCAAACCGTAAAGAGCAAGCCGATCTAGCGCTTAAGTATTTCAAAGGTAATGACTCTG
CTAACTGTAGACACTGCCACACTCGTATCTACGAGAACCAGCCTGAGTCTATGAAGAAGATGGCGAAGAGAATGCACGCT
AACAACTTCAAGAAAGCTGAAGACAAGCGTAAGACTTGTGTAGACTGTCACAAAGGTGTTGCTCACGTTTATCCTAAGGG
ATAA

Upstream 100 bases:

>100_bases
GTTCCAGAACAATGAGTAGGATTTAGTTTATACTGCGTGACATAAATAGAGATGAAGTTAACTTACATCGATATAAAAAT
TAAATACTTGGAGAAGAGTG

Downstream 100 bases:

>100_bases
TACGCAAGCTCCTTTAGAATTAGTCCAGACCGTTAAGTCTGCAGGTTAATCGTGAAAAGCCCCTTAATTGGGGCTTTTTT
GTTTTTAAATTAAGGCGATG

Product: NapC/NirT cytochrome c domain-containing protein

Products: H2O; trimethylamine; NAD [C]

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNWRALFKPSAKYSILALLVVGIVVGVVGYFATQQTLHATSTDEFCMSCHSNHSLKDEVLASPHGGNSFGVTVQCQDCHL
PHNPVKYLIKKIVVSKDLYGYLTIDGFNTQEWLDANRKEQADLALKYFKGNDSANCRHCHTRIYENQPESMKKMAKRMHA
NNFKKAEDKRKTCVDCHKGVAHVYPKG

Sequences:

>Translated_187_residues
MNWRALFKPSAKYSILALLVVGIVVGVVGYFATQQTLHATSTDEFCMSCHSNHSLKDEVLASPHGGNSFGVTVQCQDCHL
PHNPVKYLIKKIVVSKDLYGYLTIDGFNTQEWLDANRKEQADLALKYFKGNDSANCRHCHTRIYENQPESMKKMAKRMHA
NNFKKAEDKRKTCVDCHKGVAHVYPKG
>Mature_187_residues
MNWRALFKPSAKYSILALLVVGIVVGVVGYFATQQTLHATSTDEFCMSCHSNHSLKDEVLASPHGGNSFGVTVQCQDCHL
PHNPVKYLIKKIVVSKDLYGYLTIDGFNTQEWLDANRKEQADLALKYFKGNDSANCRHCHTRIYENQPESMKKMAKRMHA
NNFKKAEDKRKTCVDCHKGVAHVYPKG

Specific function: Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorA. Acts by transferring electrons from the membranous menaquinones to TorA. This transfer probably involves an electron transfer pathway from menaquinones to the N-terminal dom

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TorC/TorY family [H]

Homologues:

Organism=Escherichia coli, GI1787230, Length=183, Percent_Identity=36.0655737704918, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788530, Length=184, Percent_Identity=34.2391304347826, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788181, Length=171, Percent_Identity=36.2573099415205, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009154
- InterPro:   IPR011031
- InterPro:   IPR005126 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 21118; Mature: 21118

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWRALFKPSAKYSILALLVVGIVVGVVGYFATQQTLHATSTDEFCMSCHSNHSLKDEVL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
ASPHGGNSFGVTVQCQDCHLPHNPVKYLIKKIVVSKDLYGYLTIDGFNTQEWLDANRKEQ
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCHH
ADLALKYFKGNDSANCRHCHTRIYENQPESMKKMAKRMHANNFKKAEDKRKTCVDCHKGV
HHHEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
AHVYPKG
HHCCCCC
>Mature Secondary Structure
MNWRALFKPSAKYSILALLVVGIVVGVVGYFATQQTLHATSTDEFCMSCHSNHSLKDEVL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
ASPHGGNSFGVTVQCQDCHLPHNPVKYLIKKIVVSKDLYGYLTIDGFNTQEWLDANRKEQ
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCHH
ADLALKYFKGNDSANCRHCHTRIYENQPESMKKMAKRMHANNFKKAEDKRKTCVDCHKGV
HHHEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
AHVYPKG
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: trimethylamine-N-oxide; NADH [C]

Specific reaction: trimethylamine-N-oxide + NADH = H2O + trimethylamine + NAD [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]