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The map label for this gene is yhgF [C]

Identifier: 167622183

GI number: 167622183

Start: 289982

End: 292339

Strand: Direct

Name: yhgF [C]

Synonym: Shal_0242

Alternate gene names: 167622183

Gene position: 289982-292339 (Clockwise)

Preceding gene: 167622182

Following gene: 167622186

Centisome position: 5.55

GC content: 48.22

Gene sequence:

>2358_bases
ATGCAAAATATTGCACAGCTCATCGCTGAGGAACTCAATGTTCGTCAGCAACAAGTTATCGATACCATTTCATTACTCGA
TGACGGCGCAACCGTGCCGTTTATTGCCCGTTACCGTAAAGAGGCCACTGGTGGCTTAGATGACGTTCAACTGCGTACCC
TATTTAGTCGTTTGGGCTATTTACGGGATCTCAATGATCGTCGTAACGTAATTTTGTCGAGTATTGAAGCACAGAGTAAG
TTAACACCTGAGCTGAAAGCAGCGATTATTGCTGCCGATAGTAAGACGCGTCTAGAAGATCTCTACCTTCCATATAAGCC
AAAGCGTCGCACTAAGGGTCTTATTGCGATTGAAGCGGGCATCGAACCTTTAGCCGATTACCTGTTAGCTAATCGCCAAG
TCGATTGCGAAGCGGCTGCTAGCGAATATATCAACGCTGCCGCAGGTTTTGCCGACGCCAAGGCTGTGCTCGATGGCGCA
CGCTTTATCTTGATGGAGCGCTTTGCTGAAGATGCAGAGCTGTTGCAAAAAATTCGTACTCAAGTTGAGCAAAATGCCGT
ACTTGAAAGCACTATGGTTAAGGGCAAAGAGAAAGAAGGCGCAAAGTTTAGAGATTACTTCGAGCATTCTGAAAAGCTGA
CCAAAGTGCCATCACACCGTGCGCTAGCGATGCTGCGTGGCCGCAATGAAGGCATGTTGAGCCTTAATATTAATGCCGAC
CCGCATCAAGAGCCTAAGCAAGCGAGCTATTGTGAAGTGATCATTATTGAGCATTTTAAGCTGGGGCTTACAGATACTGG
CGTTGATGCTTGGCTAAAAACAGTGGTAGCGGCGACGTGGAAAGTTAAGATTGCCCTACAGATGGAAACCGAGTTTCTTG
GCCGTATGCGTGATAGCGCCGAACAAGAAGCGATTAAGGTTTTTGCCCGTAACTTAGGCGATCTACTGATGGCGGCACCA
GCGGGTGCTAAAGCGACCTTAGGTTTAGATCCTGGTCTTCGCTCTGGCGTTAAAGTAGCGATTGTCAACGACACGGGTAA
GCTGGTGGCGCACACGACTATTTTCCCACATGCTCCGCAAAATCAGTGGGATAAGTCGGTAAGAACCTTAAGTAACCTAG
TTAAGATGCACAAGGTTGAGTTGATTGCGATTGGTAACGGCACCGCATCGCGTGAAACCGATAAGCTAGCTGCAGACTTA
ATCAGCCAAGTAAAAGCTGACTTGCCAACATTGACCAAAATTATGGTCAGCGAAGCGGGTGCATCTGTCTATTCAGCCTC
TGAGCTAGCCTCGGAAGAGTTCCCAGATATCGATGTATCTATTCGCGGCGCGGTGTCTATTGCACGCCGCCTACAAGATC
CGTTGGCAGAGCTTGTTAAGATTGAGCCTAAAGCGATTGGTGTCGGCCAATATCAGCACGATGTGAGTCAGAGTCAGCTA
TCAAGTTCACTAGAAGCGGTTGTCGAAGACTGTGTGAACGGCGTTGGTGTTGACGTTAATATGGCGTCAGCTGCACTGCT
TGCACAGGTGGCGGGTCTAAATAAAACCTTAGCGCGTAATATCGTGACTCATCGTGACGAGCAAGGTCGCTTTAACAACC
GTAAAGCACTGCTTAAAGTCGCGCGCCTTGGGCCTAAAGCCTATGAGCAAGCAGCGGGTTTCCTGCGTATTAACGACGGT
GATAACCCACTCGATAGCTCTTCGGTTCACCCTGAAGCCTACTCATTAGTCGAGTCTATTGCTGCGGATAAAGCTGTCTC
TGTTGCTGAATTGGTGGGTAACTCAGAACTGATTAAGTTACTGGAAGCAAAAGACTTCATTACCAACGAGTTTGGTCTAC
CTACGGTAACCGATATTCTGGCTGAGCTTGATAAGCCTGGTCGAGATCCTCGTGGTGAGTTTAAGACTGCGACCTTTAAA
GAGGGCGTAGAAGAGATTAAAGATCTGCAGCTAGATATGATCTTAGAAGGTGTGGTGACTAATGTGACCAACTTTGGCGC
CTTTGTTGATGTGGGCGTTCATCAAGATGGCTTAGTGCATATCTCTTCGATGACCGACAAGTTTATCGACGATCCACATA
AGGTGGTTAAAGCCGGCGATATCGTTAAAGTGAAGGTGATGGAAGTGGATGCCGAGCGTCGCCGTATTGCGCTAAGTATG
CGTCTTGATGATAAGGCTGGCGATGCCCATAAGAGTGCGCCACGTCCTACTTACAACAAAGCAAGCCCGAATAAGGGCGC
TGCGAATAAAGGCACTAATCAGCAACGCGGCCAACAGAAGAGCCATAAGCCTAAGCAGCAAGCCAATGCTGCCATGGGTA
ACGCTTTTGCCGATGCCTTCGCGAAATTGAAGAAGTAA

Upstream 100 bases:

>100_bases
CGCAAATAACATAATTGTCTTAGTATTTGCATTAACCAAATCCATGCGCTGTGGTATCTTTGGTGCAATACCTTTTATCA
ACTAGGCTCGACCTCTATTT

Downstream 100 bases:

>100_bases
TCGTTTAAGCGAGACACAAAAAAACCGACAACTGAGTTTGTCGGTTTTTTTATGCCGTTTCTAAAAGGTTTGGCTGAGTA
TCGGGTTCGGTTCGTTGATG

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 785; Mature: 785

Protein sequence:

>785_residues
MQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDVQLRTLFSRLGYLRDLNDRRNVILSSIEAQSK
LTPELKAAIIAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAAASEYINAAAGFADAKAVLDGA
RFILMERFAEDAELLQKIRTQVEQNAVLESTMVKGKEKEGAKFRDYFEHSEKLTKVPSHRALAMLRGRNEGMLSLNINAD
PHQEPKQASYCEVIIIEHFKLGLTDTGVDAWLKTVVAATWKVKIALQMETEFLGRMRDSAEQEAIKVFARNLGDLLMAAP
AGAKATLGLDPGLRSGVKVAIVNDTGKLVAHTTIFPHAPQNQWDKSVRTLSNLVKMHKVELIAIGNGTASRETDKLAADL
ISQVKADLPTLTKIMVSEAGASVYSASELASEEFPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL
SSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKVARLGPKAYEQAAGFLRINDG
DNPLDSSSVHPEAYSLVESIAADKAVSVAELVGNSELIKLLEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTATFK
EGVEEIKDLQLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVKVKVMEVDAERRRIALSM
RLDDKAGDAHKSAPRPTYNKASPNKGAANKGTNQQRGQQKSHKPKQQANAAMGNAFADAFAKLKK

Sequences:

>Translated_785_residues
MQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDVQLRTLFSRLGYLRDLNDRRNVILSSIEAQSK
LTPELKAAIIAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAAASEYINAAAGFADAKAVLDGA
RFILMERFAEDAELLQKIRTQVEQNAVLESTMVKGKEKEGAKFRDYFEHSEKLTKVPSHRALAMLRGRNEGMLSLNINAD
PHQEPKQASYCEVIIIEHFKLGLTDTGVDAWLKTVVAATWKVKIALQMETEFLGRMRDSAEQEAIKVFARNLGDLLMAAP
AGAKATLGLDPGLRSGVKVAIVNDTGKLVAHTTIFPHAPQNQWDKSVRTLSNLVKMHKVELIAIGNGTASRETDKLAADL
ISQVKADLPTLTKIMVSEAGASVYSASELASEEFPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL
SSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKVARLGPKAYEQAAGFLRINDG
DNPLDSSSVHPEAYSLVESIAADKAVSVAELVGNSELIKLLEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTATFK
EGVEEIKDLQLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVKVKVMEVDAERRRIALSM
RLDDKAGDAHKSAPRPTYNKASPNKGAANKGTNQQRGQQKSHKPKQQANAAMGNAFADAFAKLKK
>Mature_785_residues
MQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDVQLRTLFSRLGYLRDLNDRRNVILSSIEAQSK
LTPELKAAIIAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAAASEYINAAAGFADAKAVLDGA
RFILMERFAEDAELLQKIRTQVEQNAVLESTMVKGKEKEGAKFRDYFEHSEKLTKVPSHRALAMLRGRNEGMLSLNINAD
PHQEPKQASYCEVIIIEHFKLGLTDTGVDAWLKTVVAATWKVKIALQMETEFLGRMRDSAEQEAIKVFARNLGDLLMAAP
AGAKATLGLDPGLRSGVKVAIVNDTGKLVAHTTIFPHAPQNQWDKSVRTLSNLVKMHKVELIAIGNGTASRETDKLAADL
ISQVKADLPTLTKIMVSEAGASVYSASELASEEFPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL
SSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKVARLGPKAYEQAAGFLRINDG
DNPLDSSSVHPEAYSLVESIAADKAVSVAELVGNSELIKLLEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTATFK
EGVEEIKDLQLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVKVKVMEVDAERRRIALSM
RLDDKAGDAHKSAPRPTYNKASPNKGAANKGTNQQRGQQKSHKPKQQANAAMGNAFADAFAKLKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=791, Percent_Identity=31.4791403286979, Blast_Score=358, Evalue=1e-98,
Organism=Homo sapiens, GI27597090, Length=760, Percent_Identity=22.1052631578947, Blast_Score=109, Evalue=8e-24,
Organism=Escherichia coli, GI87082262, Length=731, Percent_Identity=64.0218878248974, Blast_Score=942, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=42.1052631578947, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=726, Percent_Identity=28.9256198347107, Blast_Score=231, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17552892, Length=283, Percent_Identity=27.208480565371, Blast_Score=76, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6321552, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI62484314, Length=763, Percent_Identity=31.4547837483617, Blast_Score=366, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24640080, Length=470, Percent_Identity=21.9148936170213, Blast_Score=93, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85601; Mature: 85601

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50126 S1 ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDVQLRTLFSRLGY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRDLNDRRNVILSSIEAQSKLTPELKAAIIAADSKTRLEDLYLPYKPKRRTKGLIAIEAG
HHCCCHHHHHHHHHHHHHHHCCHHHHEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECC
IEPLADYLLANRQVDCEAAASEYINAAAGFADAKAVLDGARFILMERFAEDAELLQKIRT
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVEQNAVLESTMVKGKEKEGAKFRDYFEHSEKLTKVPSHRALAMLRGRNEGMLSLNINAD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCC
PHQEPKQASYCEVIIIEHFKLGLTDTGVDAWLKTVVAATWKVKIALQMETEFLGRMRDSA
CCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHH
EQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNDTGKLVAHTTIFPHAPQ
HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCCC
NQWDKSVRTLSNLVKMHKVELIAIGNGTASRETDKLAADLISQVKADLPTLTKIMVSEAG
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
ASVYSASELASEEFPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL
CHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
ARLGPKAYEQAAGFLRINDGDNPLDSSSVHPEAYSLVESIAADKAVSVAELVGNSELIKL
HHCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTATFKEGVEEIKDLQLDMILEGVVT
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVKVKVMEVDAERRRIALSM
HHHHCCCEEEECCCCCCCEEEHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCCCEEEEEE
RLDDKAGDAHKSAPRPTYNKASPNKGAANKGTNQQRGQQKSHKPKQQANAAMGNAFADAF
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHHHHHH
AKLKK
HHHCC
>Mature Secondary Structure
MQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDVQLRTLFSRLGY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRDLNDRRNVILSSIEAQSKLTPELKAAIIAADSKTRLEDLYLPYKPKRRTKGLIAIEAG
HHCCCHHHHHHHHHHHHHHHCCHHHHEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECC
IEPLADYLLANRQVDCEAAASEYINAAAGFADAKAVLDGARFILMERFAEDAELLQKIRT
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVEQNAVLESTMVKGKEKEGAKFRDYFEHSEKLTKVPSHRALAMLRGRNEGMLSLNINAD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCC
PHQEPKQASYCEVIIIEHFKLGLTDTGVDAWLKTVVAATWKVKIALQMETEFLGRMRDSA
CCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHH
EQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNDTGKLVAHTTIFPHAPQ
HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCCC
NQWDKSVRTLSNLVKMHKVELIAIGNGTASRETDKLAADLISQVKADLPTLTKIMVSEAG
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
ASVYSASELASEEFPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL
CHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
ARLGPKAYEQAAGFLRINDGDNPLDSSSVHPEAYSLVESIAADKAVSVAELVGNSELIKL
HHCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTATFKEGVEEIKDLQLDMILEGVVT
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVKVKVMEVDAERRRIALSM
HHHHCCCEEEECCCCCCCEEEHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCCCEEEEEE
RLDDKAGDAHKSAPRPTYNKASPNKGAANKGTNQQRGQQKSHKPKQQANAAMGNAFADAF
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHHHHHH
AKLKK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]