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The map label for this gene is comF [H]

Identifier: 167622186

GI number: 167622186

Start: 293804

End: 294568

Strand: Direct

Name: comF [H]

Synonym: Shal_0245

Alternate gene names: 167622186

Gene position: 293804-294568 (Clockwise)

Preceding gene: 167622183

Following gene: 167622188

Centisome position: 5.62

GC content: 46.41

Gene sequence:

>765_bases
GTGTTGTCTTTGGTTAACAGGGGAATATTGAAAAGGATTTCACCTATTAAGATAATGTTCTTGAATAGATGGCTCGCGGC
TATTTTACCCAATCGCTGTTTGATGTGCCATCAACATATAGAGGCAGAGCATCACGGAATATGTACTGTGTGTTTACATG
CTTGCCGTTATCAAACTGAGATCTGTTTAGGCTGTGGCAGCAAAATATTACTGCAGATGCCTTTTTGTGGGCGCTGTATG
CTTTCCCCCAGATTAAAAGTGATTGCACCTTGCAGTTACCATCAAGGGATGGGGCATTGGGTTGGGCAGATTAAGTATCA
GGCGCAATTTGCTGTGATTGATGTGTTAGTCGATGCCTTAGTACAGCGAATTTTGTACCTAGAGTTCTTGGGCTTCATAG
AGTTGCCCCAAGTGTTGGTAGCAGTGCCACTGCACCGAAAAAGACTGCAACAGCGAGGCTTTAATCAGGCATGGTTAATT
GCGCATGCGCTGTCAAAGCGGCTGGATATTCCCCTTGTCGACAATCTGCTGCTAAGGACCATAGACACACAACCTCAGGC
TGGACTCAGCGGAAAACTGCGGCGCAAGAACCTTAACAATGCTTTTGAGCTATCAGCTGAGTTTAATTGGCAGCGAGTCG
CCTTGATTGATGATGTGGTAACAACCGGTACCACGGTTGATGAAATTGCGAGGTTATTGCAGCGTAAGCATACTCAGGTA
CAAGTGTGGTGCCTAGCAAGAGCCGAAGCACCGGGCCTGAGTTAA

Upstream 100 bases:

>100_bases
CGTCAGGGCCTTGGCCGATAGATTCAACATGTAACTTTATTTGGCTCACTTAGGACCTCATAGCTTAACGAGGCAACGTA
GAAAAGGGGTTACCTAATTC

Downstream 100 bases:

>100_bases
TCTTGTTCAGCCATTTATATCGATAAGAAATTAATGCAACGCAGGAATAAAATAGAGCGCGTTAGCATAGACTTTTTGGC
TGCCTAACCAGATATTTCTA

Product: competence protein ComF

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLSLVNRGILKRISPIKIMFLNRWLAAILPNRCLMCHQHIEAEHHGICTVCLHACRYQTEICLGCGSKILLQMPFCGRCM
LSPRLKVIAPCSYHQGMGHWVGQIKYQAQFAVIDVLVDALVQRILYLEFLGFIELPQVLVAVPLHRKRLQQRGFNQAWLI
AHALSKRLDIPLVDNLLLRTIDTQPQAGLSGKLRRKNLNNAFELSAEFNWQRVALIDDVVTTGTTVDEIARLLQRKHTQV
QVWCLARAEAPGLS

Sequences:

>Translated_254_residues
MLSLVNRGILKRISPIKIMFLNRWLAAILPNRCLMCHQHIEAEHHGICTVCLHACRYQTEICLGCGSKILLQMPFCGRCM
LSPRLKVIAPCSYHQGMGHWVGQIKYQAQFAVIDVLVDALVQRILYLEFLGFIELPQVLVAVPLHRKRLQQRGFNQAWLI
AHALSKRLDIPLVDNLLLRTIDTQPQAGLSGKLRRKNLNNAFELSAEFNWQRVALIDDVVTTGTTVDEIARLLQRKHTQV
QVWCLARAEAPGLS
>Mature_254_residues
MLSLVNRGILKRISPIKIMFLNRWLAAILPNRCLMCHQHIEAEHHGICTVCLHACRYQTEICLGCGSKILLQMPFCGRCM
LSPRLKVIAPCSYHQGMGHWVGQIKYQAQFAVIDVLVDALVQRILYLEFLGFIELPQVLVAVPLHRKRLQQRGFNQAWLI
AHALSKRLDIPLVDNLLLRTIDTQPQAGLSGKLRRKNLNNAFELSAEFNWQRVALIDDVVTTGTTVDEIARLLQRKHTQV
QVWCLARAEAPGLS

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=226, Percent_Identity=35.3982300884956, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 28858; Mature: 28858

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLVNRGILKRISPIKIMFLNRWLAAILPNRCLMCHQHIEAEHHGICTVCLHACRYQTE
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ICLGCGSKILLQMPFCGRCMLSPRLKVIAPCSYHQGMGHWVGQIKYQAQFAVIDVLVDAL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VQRILYLEFLGFIELPQVLVAVPLHRKRLQQRGFNQAWLIAHALSKRLDIPLVDNLLLRT
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
IDTQPQAGLSGKLRRKNLNNAFELSAEFNWQRVALIDDVVTTGTTVDEIARLLQRKHTQV
CCCCCCCCCCCHHHHCCCCCCEEEEECCCEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEE
QVWCLARAEAPGLS
EEEEEEECCCCCCC
>Mature Secondary Structure
MLSLVNRGILKRISPIKIMFLNRWLAAILPNRCLMCHQHIEAEHHGICTVCLHACRYQTE
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ICLGCGSKILLQMPFCGRCMLSPRLKVIAPCSYHQGMGHWVGQIKYQAQFAVIDVLVDAL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VQRILYLEFLGFIELPQVLVAVPLHRKRLQQRGFNQAWLIAHALSKRLDIPLVDNLLLRT
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
IDTQPQAGLSGKLRRKNLNNAFELSAEFNWQRVALIDDVVTTGTTVDEIARLLQRKHTQV
CCCCCCCCCCCHHHHCCCCCCEEEEECCCEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEE
QVWCLARAEAPGLS
EEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]