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The map label for this gene is nahR [H]

Identifier: 167622179

GI number: 167622179

Start: 285880

End: 286851

Strand: Direct

Name: nahR [H]

Synonym: Shal_0238

Alternate gene names: 167622179

Gene position: 285880-286851 (Clockwise)

Preceding gene: 167622178

Following gene: 167622182

Centisome position: 5.47

GC content: 43.93

Gene sequence:

>972_bases
ATGAACACCAATGAGAGTGTTAAAGATCTTTCTGTTGCTCACCTTCAGCTAATAGTCTGTCTTATTAAGCATGGAAACGC
CTGCGTAGCATCAGATGAGCTCGGTATGAGTCAGTCGACAATCAGTTATCATCTACGTCGCGTGCGAAGTATTTTTTCTG
ATGAGATGTTTGTAAGAACCGGAAAAGGGCTTAAACCCACCGAGCGCTGTCTTCAAGTTGGTCATTTTGCCCAAGACTTG
ATTAACCGTGTTGAAGAGGAATTAATTCACGGTAATGACTTTGAGGCAACCCATATTGAGCGAGAGCTGAGTTTAATTGC
TGATGATACTGCCTGTGGTTGGTTTGGGGAGTTATTTGTCGATCTGCACAAGGCACTGCCTAAGGTAAACCTGTGTGCCC
GTCCCTGGTATCTAAATGCAATGAAAGACTTAGATAACGGCGCCGTTCACTTTGGATTGCATATTATGCAAAGCGGTATC
AAGGGGATTTATGATCTAGAAGTGGCTCCCTGCTATCGTTTATGTGTGGTGCGAGATGGGCATCCTCTGGTGTCGCAAGG
TGAGGTAACGCTGGAAGATCTGGCTATGTATCCGGTAATTTTGAATGACTTAGCTGGCTGGAATAATAACGGTCACTCGG
TGATGGAAACCGTCCTTAAAAACCACGGCCTTAAAGCAAATTTAGTAGGGCGCTTAGGTTATGTAAATAGCATTTTTAGT
GCGTTACAGGGCTGTAATGCGATTACCTACACTTCAGCCGTGTCTCTACCTAAGGATCTGTCAGGCTTATCTCTACTTAA
GGCGCCTGCAGCACTTGATGCCGTCGAATGCAACTACCGGCTTTATATCAGTAAGACACGCTATGGTTCACAGGAAACTA
ATTACTTAATTGAGTTTCTTTATAATTCTTTTAAGCGCTTTGCTACTCGTCAATATGAAAGGCCAGAGGTCGCCCCTATT
ATTAGAAGTTGA

Upstream 100 bases:

>100_bases
ATATGTGAACACCTTATGAGATAACGTATTGGGTGCTATTTTGCCTCTATTGTTACGGTTAATATCTAGCCATATACGCT
AAAGTTCCCAAGGATGTATG

Downstream 100 bases:

>100_bases
TAATTCTGACTATTATGGGTAATAGTGTCGCAATTAATAACCGTTAATTAGAGGTTATTCAATCGGCAACCAGACCTGAG
CATGCAATCCACCTTCACTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNTNESVKDLSVAHLQLIVCLIKHGNACVASDELGMSQSTISYHLRRVRSIFSDEMFVRTGKGLKPTERCLQVGHFAQDL
INRVEEELIHGNDFEATHIERELSLIADDTACGWFGELFVDLHKALPKVNLCARPWYLNAMKDLDNGAVHFGLHIMQSGI
KGIYDLEVAPCYRLCVVRDGHPLVSQGEVTLEDLAMYPVILNDLAGWNNNGHSVMETVLKNHGLKANLVGRLGYVNSIFS
ALQGCNAITYTSAVSLPKDLSGLSLLKAPAALDAVECNYRLYISKTRYGSQETNYLIEFLYNSFKRFATRQYERPEVAPI
IRS

Sequences:

>Translated_323_residues
MNTNESVKDLSVAHLQLIVCLIKHGNACVASDELGMSQSTISYHLRRVRSIFSDEMFVRTGKGLKPTERCLQVGHFAQDL
INRVEEELIHGNDFEATHIERELSLIADDTACGWFGELFVDLHKALPKVNLCARPWYLNAMKDLDNGAVHFGLHIMQSGI
KGIYDLEVAPCYRLCVVRDGHPLVSQGEVTLEDLAMYPVILNDLAGWNNNGHSVMETVLKNHGLKANLVGRLGYVNSIFS
ALQGCNAITYTSAVSLPKDLSGLSLLKAPAALDAVECNYRLYISKTRYGSQETNYLIEFLYNSFKRFATRQYERPEVAPI
IRS
>Mature_323_residues
MNTNESVKDLSVAHLQLIVCLIKHGNACVASDELGMSQSTISYHLRRVRSIFSDEMFVRTGKGLKPTERCLQVGHFAQDL
INRVEEELIHGNDFEATHIERELSLIADDTACGWFGELFVDLHKALPKVNLCARPWYLNAMKDLDNGAVHFGLHIMQSGI
KGIYDLEVAPCYRLCVVRDGHPLVSQGEVTLEDLAMYPVILNDLAGWNNNGHSVMETVLKNHGLKANLVGRLGYVNSIFS
ALQGCNAITYTSAVSLPKDLSGLSLLKAPAALDAVECNYRLYISKTRYGSQETNYLIEFLYNSFKRFATRQYERPEVAPI
IRS

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36109; Mature: 36109

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTNESVKDLSVAHLQLIVCLIKHGNACVASDELGMSQSTISYHLRRVRSIFSDEMFVRT
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHEEC
GKGLKPTERCLQVGHFAQDLINRVEEELIHGNDFEATHIERELSLIADDTACGWFGELFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
DLHKALPKVNLCARPWYLNAMKDLDNGAVHFGLHIMQSGIKGIYDLEVAPCYRLCVVRDG
HHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECC
HPLVSQGEVTLEDLAMYPVILNDLAGWNNNGHSVMETVLKNHGLKANLVGRLGYVNSIFS
CCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
ALQGCNAITYTSAVSLPKDLSGLSLLKAPAALDAVECNYRLYISKTRYGSQETNYLIEFL
HHHCCCEEEEHHHHCCCCCCCCHHHHHCCCHHHHEECCEEEEEEECCCCCHHHHHHHHHH
YNSFKRFATRQYERPEVAPIIRS
HHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNTNESVKDLSVAHLQLIVCLIKHGNACVASDELGMSQSTISYHLRRVRSIFSDEMFVRT
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHEEC
GKGLKPTERCLQVGHFAQDLINRVEEELIHGNDFEATHIERELSLIADDTACGWFGELFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
DLHKALPKVNLCARPWYLNAMKDLDNGAVHFGLHIMQSGIKGIYDLEVAPCYRLCVVRDG
HHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECC
HPLVSQGEVTLEDLAMYPVILNDLAGWNNNGHSVMETVLKNHGLKANLVGRLGYVNSIFS
CCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
ALQGCNAITYTSAVSLPKDLSGLSLLKAPAALDAVECNYRLYISKTRYGSQETNYLIEFL
HHHCCCEEEEHHHHCCCCCCCCHHHHHCCCHHHHEECCEEEEEEECCCCCHHHHHHHHHH
YNSFKRFATRQYERPEVAPIIRS
HHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]