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The map label for this gene is ydhM [C]

Identifier: 167622174

GI number: 167622174

Start: 280255

End: 280920

Strand: Direct

Name: ydhM [C]

Synonym: Shal_0233

Alternate gene names: 167622174

Gene position: 280255-280920 (Clockwise)

Preceding gene: 167622169

Following gene: 167622177

Centisome position: 5.36

GC content: 37.69

Gene sequence:

>666_bases
ATGGAAAGCAAGACTTTAGAACATATTTTAAATGTGTCAGAACAGCTAATTTATAAAGATGGTGTGATCGGGTTTAAGTT
TTGCACTGTAGCAAAAGAAGCTGGAATCTCTACAACTAGCTTATATAAGTTCTTTGGAAATAAAGAAGATATATTGGTTG
CTTTGGCAAGTAAAAGTTTTATGAACACCAAAAATAAAAAGTGGTGGTTAAATTTAGAAGGTGATGCGCTAATAAAAGTC
ATTGCTTATTATATTTTACAGTTAGATGTCGCTCATGATTTTCCCTTTTACTCATCTATGTCAACGCTAACAAGTAATCA
GCTTATTTGCGGTCGTTCTGCTCACCCTCATATCAGCGCATTGAATAAGAATGCCTATGGTTTTTGGCAAACACCTATTG
CGCTATTGCAGCAGGCTAGAGGGCAGGGGAGTTGTCAACTCTGTGACCAAGCGATTACTAGACTGTGTGCACTGATCTCT
ATGATTATCAGAGGTCAGGAAGTTGTATCTTGTGCTGAGGTAGGTAGAGCTTGCAGTGCAGAAGCGAATCTCACAACCCA
ATGGATTATTGAATTTTGTTTTAAGCAAGTGGGCTTCGAATACCATTTAATTAATCATTGTATCCAACAAGCAGATATCC
TAATCACAGAGCATGGTCTTCGGTAA

Upstream 100 bases:

>100_bases
CTCACAAAAAAAAATTAGAATATCTTTATATTATTTAAACCTTGATTGTAGGCATGAAAAATAAAAAATTATTTTTTTTA
GAGATGGGATTCACAAAAAA

Downstream 100 bases:

>100_bases
CGGAACTGCTCATAAAATGCCATATGTGTTTGAAGTATGACTCAATGCAGGGAAAGTAAAGTTATGCCGTTATCCCAGTT
ATCAGCGGCGACGGTTATGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MESKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSFMNTKNKKWWLNLEGDALIKV
IAYYILQLDVAHDFPFYSSMSTLTSNQLICGRSAHPHISALNKNAYGFWQTPIALLQQARGQGSCQLCDQAITRLCALIS
MIIRGQEVVSCAEVGRACSAEANLTTQWIIEFCFKQVGFEYHLINHCIQQADILITEHGLR

Sequences:

>Translated_221_residues
MESKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSFMNTKNKKWWLNLEGDALIKV
IAYYILQLDVAHDFPFYSSMSTLTSNQLICGRSAHPHISALNKNAYGFWQTPIALLQQARGQGSCQLCDQAITRLCALIS
MIIRGQEVVSCAEVGRACSAEANLTTQWIIEFCFKQVGFEYHLINHCIQQADILITEHGLR
>Mature_221_residues
MESKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSFMNTKNKKWWLNLEGDALIKV
IAYYILQLDVAHDFPFYSSMSTLTSNQLICGRSAHPHISALNKNAYGFWQTPIALLQQARGQGSCQLCDQAITRLCALIS
MIIRGQEVVSCAEVGRACSAEANLTTQWIIEFCFKQVGFEYHLINHCIQQADILITEHGLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24791; Mature: 24791

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSF
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHH
MNTKNKKWWLNLEGDALIKVIAYYILQLDVAHDFPFYSSMSTLTSNQLICGRSAHPHISA
HCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCCCCCCHHH
LNKNAYGFWQTPIALLQQARGQGSCQLCDQAITRLCALISMIIRGQEVVSCAEVGRACSA
HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
EANLTTQWIIEFCFKQVGFEYHLINHCIQQADILITEHGLR
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCC
>Mature Secondary Structure
MESKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSF
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHH
MNTKNKKWWLNLEGDALIKVIAYYILQLDVAHDFPFYSSMSTLTSNQLICGRSAHPHISA
HCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCCCCCCHHH
LNKNAYGFWQTPIALLQQARGQGSCQLCDQAITRLCALISMIIRGQEVVSCAEVGRACSA
HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
EANLTTQWIIEFCFKQVGFEYHLINHCIQQADILITEHGLR
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA