| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622152
Identifier: 167622152
GI number: 167622152
Start: 252981
End: 255275
Strand: Reverse
Name: 167622152
Synonym: Shal_0211
Alternate gene names: NA
Gene position: 255275-252981 (Counterclockwise)
Preceding gene: 167622154
Following gene: 167622151
Centisome position: 4.88
GC content: 48.93
Gene sequence:
>2295_bases ATGATGAACGCAAACAAATTCAAAACAAGACTGTGCTATGCCACGCTTGTCGCGGCCTGCTCAATGAGCATGGTGGCGTG TTCCGGCGATGATGGTAAAGACGGTGAAGATGGTCAGCCTGGTGGTAACGTTACTACGTCGGCTGAGGTGTTAACTGTAA CCATCGACAAGACCACGATTACAGATAATACCCTTAGCATCGATTTTAGTGCCGAGAACGAACTCGCTATTCCAGTCATT AAGATTGCTGCAATCAAGATCAATGCCGCCCAACTATTGCCACAAATTGAAGGTGAGCGCTCACAATGGCAGAAACTTGC CAGCGAAACCTGCTCACCAGAAAAGGGTTGTGACGGTAACTTAGTCGACAACATGGATGGTAGCTATAGCTACACCCTGC ATGCGCCATTAGTCGCTGGCGATATTGCCCACAACGGCGATTTTACTCAGCGCGTACTGTTTAAGGTACTGGAAACTGAC AACCTGCCAGCCACCGAAGTGATTACTGACTACAATCTAGATGGCAGCGAGATCAGCGACAATCGCAGCATCATAGATGG CAGCTCATGCTTAAGCTGTCACGATGATATCGCCTCGATTAAGCATGGCGGCGACAACATTGAAAACTGTGCCAGCTGCC ATACCAGCAACTACATGTCAGACGCTAGCAAGGTGTGGCCTGTACTAGCTCATACCGTGCACATAGGTATCACTCCACAA GCGTTGGGCAACTGTACGACTTGTCACGCTAAAGAAGTCAGTGAAACAGAGCTACAAGCAACTAACTGGAACCTAGTACC AACGCGTGAGACCTGCTCTAGCTGTCACGATATGACCACTAACCCTGTTTACGATCACAGCACTCAGCCTGATAACGGTA GCTGCTTGACCTGTCACTCACCAGAGAACACCTATGATGTTCATATGAGCAAGTCAGAAAAAGCGGTTGAGGAAGATCAA CGTAATATCGTCAACATCAGCCTAGAAGACGCTAAGCTGGTTGAGCAAAACGGCGAGCATTTCGCAGAAATCAGCTTTGC GCTACTTGATAGACAAGGTCAGCGTATCGCCGTTGCCAATAACAACCCAGCTGACGCCGACTGGATTAAAAACCTGCAGC TTTATGTCAACTGGGGCACCTCGGTAGACTTCACCACCAGCCGCGGTTACAGCATCTTCGTTAAGAGTAACAAGAAAGAC ATTACTCAAGATGGTAGCGATGGCATCACTCCAGCGGGTGAGCGTGCGCGTACACCACTACACAAGTCTGAAGGCAATGT GTTTACTTACCTTATGGGTCCCGTTGTTACCCAAGATCAGTTCTCAGGCGATCTACTCGGTGATGCAGGATTTATCACTA ACCGTATGATTTACTGTTTCGACAGTGCGCAAAATCTAGTGAGCTGTGATCAGGCTGGCCATACTAAAAATGCTGAAGTT AACAAGCGTTGGTTCTTCGACAAAGATGGACTCACTGAAGCACCAGAAGCTAAACGTCCTTTGATTGTGAGCAACAAAAC TTGTGGCTCGTGCCATGGTTACGATGAGTTTAACGACAACTCTGAGCTAGCCTGTCGTAACTGCCACAGCCGCAAAACCG AGATCAACAAAGAGCTGGCGGATACCACCTGTTTCTCTGGCCATGACCACGATGAACTCGGCGAACATGTGCGTCCATTT GAAGAGCGCGCTATGGTTGCCAAAGGTAAGCCAGGCTTCCTAAGTTCGACTGCCGATATCGTTGACCCCTGTTTAGCCTG TCATAACCCGAATACGCCACCGACTCAGGCAATTCGTGAGATGCACACTAAAGCGAGTGATTGGGACTTTGTTGAGCAGC TAACCGTAAGCCACCCAGACCACAAGGTATGGATGCACTCACTTCACACTAACCAACGTGCGACTCAAGACCGTGAAAAT GGTGTGCGTAACATCGAGTTCCCAGCCGACAAAGCTAACTGTTATCGTTGTCACGAAGGTGACACCTTCGGCGTTGAGCG CCTAACCGCTGTGGGTCGTCCATTGGCACTGGATCTGGACTACAACCCAGACTCAAGAGTTCACCCAGCAACCGATATCA CGATTGATGCTTATACCTCACCAGTCTCAGCGACTTGTTATGCGTGTCATGCTAAACATGAAGATGCCGACGGTAAGATG GTAATTAACAAGGCTGTGCGTGCGCATATGGAGCAAAACGGCGGTCGTTTCGGTGTGACAGCTAACGAGCTACAAGTAGA GTCTTGCGGCGTTTGTCACTCACTAGACAACCTTAAGAAGGTGCATAACCTTTAA
Upstream 100 bases:
>100_bases TAGGTATCCGTTCACGTTGCCTCTTTCACGCTTAAGGCACACTTTTTTGCGTCGTTGACAGATCAAACGACTTAAAGAAG ATATAAAAGAGAGATAAGTG
Downstream 100 bases:
>100_bases GGTTAACACCGCAAATAGTAATTGATGTCCCTGCAAGCACATCAAGCAGCTCAACGCTCTGCGTTGAGCTGCAACTTTTT TAGCGTTCGATTAAAAAACC
Product: hypothetical protein
Products: NA
Alternate protein names: Decaheme Cytochrome C MtrF; Decaheme C-Type Cytochrome OmcA/MtrC Family; Decaheme Cytochrome C-Like Protein
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MMNANKFKTRLCYATLVAACSMSMVACSGDDGKDGEDGQPGGNVTTSAEVLTVTIDKTTITDNTLSIDFSAENELAIPVI KIAAIKINAAQLLPQIEGERSQWQKLASETCSPEKGCDGNLVDNMDGSYSYTLHAPLVAGDIAHNGDFTQRVLFKVLETD NLPATEVITDYNLDGSEISDNRSIIDGSSCLSCHDDIASIKHGGDNIENCASCHTSNYMSDASKVWPVLAHTVHIGITPQ ALGNCTTCHAKEVSETELQATNWNLVPTRETCSSCHDMTTNPVYDHSTQPDNGSCLTCHSPENTYDVHMSKSEKAVEEDQ RNIVNISLEDAKLVEQNGEHFAEISFALLDRQGQRIAVANNNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKD ITQDGSDGITPAGERARTPLHKSEGNVFTYLMGPVVTQDQFSGDLLGDAGFITNRMIYCFDSAQNLVSCDQAGHTKNAEV NKRWFFDKDGLTEAPEAKRPLIVSNKTCGSCHGYDEFNDNSELACRNCHSRKTEINKELADTTCFSGHDHDELGEHVRPF EERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIREMHTKASDWDFVEQLTVSHPDHKVWMHSLHTNQRATQDREN GVRNIEFPADKANCYRCHEGDTFGVERLTAVGRPLALDLDYNPDSRVHPATDITIDAYTSPVSATCYACHAKHEDADGKM VINKAVRAHMEQNGGRFGVTANELQVESCGVCHSLDNLKKVHNL
Sequences:
>Translated_764_residues MMNANKFKTRLCYATLVAACSMSMVACSGDDGKDGEDGQPGGNVTTSAEVLTVTIDKTTITDNTLSIDFSAENELAIPVI KIAAIKINAAQLLPQIEGERSQWQKLASETCSPEKGCDGNLVDNMDGSYSYTLHAPLVAGDIAHNGDFTQRVLFKVLETD NLPATEVITDYNLDGSEISDNRSIIDGSSCLSCHDDIASIKHGGDNIENCASCHTSNYMSDASKVWPVLAHTVHIGITPQ ALGNCTTCHAKEVSETELQATNWNLVPTRETCSSCHDMTTNPVYDHSTQPDNGSCLTCHSPENTYDVHMSKSEKAVEEDQ RNIVNISLEDAKLVEQNGEHFAEISFALLDRQGQRIAVANNNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKD ITQDGSDGITPAGERARTPLHKSEGNVFTYLMGPVVTQDQFSGDLLGDAGFITNRMIYCFDSAQNLVSCDQAGHTKNAEV NKRWFFDKDGLTEAPEAKRPLIVSNKTCGSCHGYDEFNDNSELACRNCHSRKTEINKELADTTCFSGHDHDELGEHVRPF EERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIREMHTKASDWDFVEQLTVSHPDHKVWMHSLHTNQRATQDREN GVRNIEFPADKANCYRCHEGDTFGVERLTAVGRPLALDLDYNPDSRVHPATDITIDAYTSPVSATCYACHAKHEDADGKM VINKAVRAHMEQNGGRFGVTANELQVESCGVCHSLDNLKKVHNL >Mature_764_residues MMNANKFKTRLCYATLVAACSMSMVACSGDDGKDGEDGQPGGNVTTSAEVLTVTIDKTTITDNTLSIDFSAENELAIPVI KIAAIKINAAQLLPQIEGERSQWQKLASETCSPEKGCDGNLVDNMDGSYSYTLHAPLVAGDIAHNGDFTQRVLFKVLETD NLPATEVITDYNLDGSEISDNRSIIDGSSCLSCHDDIASIKHGGDNIENCASCHTSNYMSDASKVWPVLAHTVHIGITPQ ALGNCTTCHAKEVSETELQATNWNLVPTRETCSSCHDMTTNPVYDHSTQPDNGSCLTCHSPENTYDVHMSKSEKAVEEDQ RNIVNISLEDAKLVEQNGEHFAEISFALLDRQGQRIAVANNNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKD ITQDGSDGITPAGERARTPLHKSEGNVFTYLMGPVVTQDQFSGDLLGDAGFITNRMIYCFDSAQNLVSCDQAGHTKNAEV NKRWFFDKDGLTEAPEAKRPLIVSNKTCGSCHGYDEFNDNSELACRNCHSRKTEINKELADTTCFSGHDHDELGEHVRPF EERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIREMHTKASDWDFVEQLTVSHPDHKVWMHSLHTNQRATQDREN GVRNIEFPADKANCYRCHEGDTFGVERLTAVGRPLALDLDYNPDSRVHPATDITIDAYTSPVSATCYACHAKHEDADGKM VINKAVRAHMEQNGGRFGVTANELQVESCGVCHSLDNLKKVHNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83791; Mature: 83791
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC ; PS00290 IG_MHC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNANKFKTRLCYATLVAACSMSMVACSGDDGKDGEDGQPGGNVTTSAEVLTVTIDKTTI CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECEEE TDNTLSIDFSAENELAIPVIKIAAIKINAAQLLPQIEGERSQWQKLASETCSPEKGCDGN CCCEEEEEECCCCCEEEEEEEEEEEEECHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC LVDNMDGSYSYTLHAPLVAGDIAHNGDFTQRVLFKVLETDNLPATEVITDYNLDGSEISD CCCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCC NRSIIDGSSCLSCHDDIASIKHGGDNIENCASCHTSNYMSDASKVWPVLAHTVHIGITPQ CCCEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHH ALGNCTTCHAKEVSETELQATNWNLVPTRETCSSCHDMTTNPVYDHSTQPDNGSCLTCHS HHCCCCCCCCCCCCHHHEEECCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC PENTYDVHMSKSEKAVEEDQRNIVNISLEDAKLVEQNGEHFAEISFALLDRQGQRIAVAN CCCCEEEEECCCHHHHHHHCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEC NNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKDITQDGSDGITPAGERARTPL CCCCCHHHHCCEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCC HKSEGNVFTYLMGPVVTQDQFSGDLLGDAGFITNRMIYCFDSAQNLVSCDQAGHTKNAEV CCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHCCEEEEECCCCHHHHHHHCCCCCCCCC NKRWFFDKDGLTEAPEAKRPLIVSNKTCGSCHGYDEFNDNSELACRNCHSRKTEINKELA CCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DTTCFSGHDHDELGEHVRPFEERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIRE HCCCCCCCCHHHHHHHCCCHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH MHTKASDWDFVEQLTVSHPDHKVWMHSLHTNQRATQDRENGVRNIEFPADKANCYRCHEG HHCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCEEEECCC DTFGVERLTAVGRPLALDLDYNPDSRVHPATDITIDAYTSPVSATCYACHAKHEDADGKM CCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCC VINKAVRAHMEQNGGRFGVTANELQVESCGVCHSLDNLKKVHNL HHHHHHHHHHHHCCCEECEECCCEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure MMNANKFKTRLCYATLVAACSMSMVACSGDDGKDGEDGQPGGNVTTSAEVLTVTIDKTTI CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECEEE TDNTLSIDFSAENELAIPVIKIAAIKINAAQLLPQIEGERSQWQKLASETCSPEKGCDGN CCCEEEEEECCCCCEEEEEEEEEEEEECHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC LVDNMDGSYSYTLHAPLVAGDIAHNGDFTQRVLFKVLETDNLPATEVITDYNLDGSEISD CCCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCC NRSIIDGSSCLSCHDDIASIKHGGDNIENCASCHTSNYMSDASKVWPVLAHTVHIGITPQ CCCEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHH ALGNCTTCHAKEVSETELQATNWNLVPTRETCSSCHDMTTNPVYDHSTQPDNGSCLTCHS HHCCCCCCCCCCCCHHHEEECCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC PENTYDVHMSKSEKAVEEDQRNIVNISLEDAKLVEQNGEHFAEISFALLDRQGQRIAVAN CCCCEEEEECCCHHHHHHHCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEC NNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKDITQDGSDGITPAGERARTPL CCCCCHHHHCCEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCC HKSEGNVFTYLMGPVVTQDQFSGDLLGDAGFITNRMIYCFDSAQNLVSCDQAGHTKNAEV CCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHCCEEEEECCCCHHHHHHHCCCCCCCCC NKRWFFDKDGLTEAPEAKRPLIVSNKTCGSCHGYDEFNDNSELACRNCHSRKTEINKELA CCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DTTCFSGHDHDELGEHVRPFEERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIRE HCCCCCCCCHHHHHHHCCCHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH MHTKASDWDFVEQLTVSHPDHKVWMHSLHTNQRATQDRENGVRNIEFPADKANCYRCHEG HHCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCEEEECCC DTFGVERLTAVGRPLALDLDYNPDSRVHPATDITIDAYTSPVSATCYACHAKHEDADGKM CCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCC VINKAVRAHMEQNGGRFGVTANELQVESCGVCHSLDNLKKVHNL HHHHHHHHHHHHCCCEECEECCCEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA