| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yeiH [C]
Identifier: 167622105
GI number: 167622105
Start: 190425
End: 191363
Strand: Reverse
Name: yeiH [C]
Synonym: Shal_0164
Alternate gene names: 167622105
Gene position: 191363-190425 (Counterclockwise)
Preceding gene: 167622106
Following gene: 167622096
Centisome position: 3.66
GC content: 49.52
Gene sequence:
>939_bases ATGACCAACGAAAGCCCAAACAAAATCCATTTAGCTGTGTTTATCTTAGTAGGCTTACTGTGCCTTATGCCGATGGTATC CTCGCCTGTCGCACTGATCTTGGGTTTTACGCTTGCCAGTATCGGTTGGGCACCCAGCCAGGTACACCTTGGCACCTTAA CTAAAAAGCTACTCGCCTACTCTATCGTGGGTCTGGGTTTTGGTATTCAGCTAGACGCCGCCGTTAGTATCAGTCTAGAG AACCTGCCACTGATCCTTGGCTCAATCATTTTCACTCTGATTTTAGGTTTTGCCCTGACCCGTTTGCTAAAGATGGATCA TAAAACGGGCCACCTTATCGCTTCGGGCACAGCAATTTGTGGTGGCAGCGCCATCGCTGCAGTATCACCTGCAATTAGGG CCAATAGCGAGCAAACGGCTATCGCACTGGCCACGATATTTATCCTTAATTCCGTGGCACTGTTCCTGTTCCCGGCCATC GGCCATGCCCTGTCTATGAGTCAGCATGATTTCGGAGTCTGGAGCGCAATAGCCATCCACGACACCTCGTCGGTCGTTGG CGCAGCCTCGGCTTACGGTAATGAAGCCTTAACCACTGCCACTACCATTAAGCTAGCACGCGCACTGTGGATCATTCCAA TCGCACTTATCAGCGCCATGCTATTTAAAGGTGACAAGAAGAAGATAGCGATCCCCTACTTTATCGGCTTCTACTGTTTA GCTATCGTAATGGTCCACTGGCTACCTGCAGGCGAAGTGATTTACAGCGCGATATTTGAGGGGTCTAAGCGACTGTTGGT GGTGTGTCTGTTCCTGATTGGCGCAGGCATTACCATCCAGAGGATGAAAGCTACGGGTCCTAAGCCACTTATTTTAGGTG TATTGCTATGGATTGCCATCGGCAGCAGTTCACTAGCGTATATTTTACTGCTTAACTAG
Upstream 100 bases:
>100_bases TCAGTTTTACTGAAGCTAACAGTAAAGTGTATTTAATTTATTAAAATTTAGCCTACCGCTATAATCAACGGCTGACCTGT AGCCGTTAATTATTAATCCC
Downstream 100 bases:
>100_bases CTAGCTATTAATAAACCCATTAAGCAGAGAAAGTTTGATGACTTCGAAAGATAACAATTAACCACAAAGGACACAAAGAG CATGAAGACAAACAATCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTNESPNKIHLAVFILVGLLCLMPMVSSPVALILGFTLASIGWAPSQVHLGTLTKKLLAYSIVGLGFGIQLDAAVSISLE NLPLILGSIIFTLILGFALTRLLKMDHKTGHLIASGTAICGGSAIAAVSPAIRANSEQTAIALATIFILNSVALFLFPAI GHALSMSQHDFGVWSAIAIHDTSSVVGAASAYGNEALTTATTIKLARALWIIPIALISAMLFKGDKKKIAIPYFIGFYCL AIVMVHWLPAGEVIYSAIFEGSKRLLVVCLFLIGAGITIQRMKATGPKPLILGVLLWIAIGSSSLAYILLLN
Sequences:
>Translated_312_residues MTNESPNKIHLAVFILVGLLCLMPMVSSPVALILGFTLASIGWAPSQVHLGTLTKKLLAYSIVGLGFGIQLDAAVSISLE NLPLILGSIIFTLILGFALTRLLKMDHKTGHLIASGTAICGGSAIAAVSPAIRANSEQTAIALATIFILNSVALFLFPAI GHALSMSQHDFGVWSAIAIHDTSSVVGAASAYGNEALTTATTIKLARALWIIPIALISAMLFKGDKKKIAIPYFIGFYCL AIVMVHWLPAGEVIYSAIFEGSKRLLVVCLFLIGAGITIQRMKATGPKPLILGVLLWIAIGSSSLAYILLLN >Mature_311_residues TNESPNKIHLAVFILVGLLCLMPMVSSPVALILGFTLASIGWAPSQVHLGTLTKKLLAYSIVGLGFGIQLDAAVSISLEN LPLILGSIIFTLILGFALTRLLKMDHKTGHLIASGTAICGGSAIAAVSPAIRANSEQTAIALATIFILNSVALFLFPAIG HALSMSQHDFGVWSAIAIHDTSSVVGAASAYGNEALTTATTIKLARALWIIPIALISAMLFKGDKKKIAIPYFIGFYCLA IVMVHWLPAGEVIYSAIFEGSKRLLVVCLFLIGAGITIQRMKATGPKPLILGVLLWIAIGSSSLAYILLLN
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=269, Percent_Identity=27.1375464684015, Blast_Score=88, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 32889; Mature: 32758
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNESPNKIHLAVFILVGLLCLMPMVSSPVALILGFTLASIGWAPSQVHLGTLTKKLLAY CCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SIVGLGFGIQLDAAVSISLENLPLILGSIIFTLILGFALTRLLKMDHKTGHLIASGTAIC HHHHHCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEE GGSAIAAVSPAIRANSEQTAIALATIFILNSVALFLFPAIGHALSMSQHDFGVWSAIAIH CCCHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE DTSSVVGAASAYGNEALTTATTIKLARALWIIPIALISAMLFKGDKKKIAIPYFIGFYCL CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH AIVMVHWLPAGEVIYSAIFEGSKRLLVVCLFLIGAGITIQRMKATGPKPLILGVLLWIAI HHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH GSSSLAYILLLN CCCCEEEEEEEC >Mature Secondary Structure TNESPNKIHLAVFILVGLLCLMPMVSSPVALILGFTLASIGWAPSQVHLGTLTKKLLAY CCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SIVGLGFGIQLDAAVSISLENLPLILGSIIFTLILGFALTRLLKMDHKTGHLIASGTAIC HHHHHCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEE GGSAIAAVSPAIRANSEQTAIALATIFILNSVALFLFPAIGHALSMSQHDFGVWSAIAIH CCCHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE DTSSVVGAASAYGNEALTTATTIKLARALWIIPIALISAMLFKGDKKKIAIPYFIGFYCL CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH AIVMVHWLPAGEVIYSAIFEGSKRLLVVCLFLIGAGITIQRMKATGPKPLILGVLLWIAI HHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH GSSSLAYILLLN CCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]