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The map label for this gene is ysgA [H]

Identifier: 167040674

GI number: 167040674

Start: 2064763

End: 2065527

Strand: Reverse

Name: ysgA [H]

Synonym: Teth514_2051

Alternate gene names: 167040674

Gene position: 2065527-2064763 (Counterclockwise)

Preceding gene: 167040675

Following gene: 167040673

Centisome position: 84.06

GC content: 32.81

Gene sequence:

>765_bases
ATGTTAATTACGAGTGAAAACAATGACCTTATAAAAAAAATAAAAAAGTTAAAAGACAAAAAGGGCCGATACGAAGAAGG
GCTGTTTTTTGTAGAGGGTACTACAAGTGTATTGGAAGCTTTAAAAAGTAACTTTGAAATAGAGTACATAGTTATGGGAG
AAGGGGTTAAAATAGATATTCCCACAGGGAATTTTAAAATTGTACATACTACTGAAAGAGTCTTTAAAAAAATAAGTGAC
ACAGTAACTCCACAAATGGTGATGGCAATTATAAAAATACCAAAATATGAAGAAGATACTTATATAAAAGACAAAGGCAT
ATATATTATAGCGGACAATATTCAAGATCCAGGAAATTTAGGTACTATAATCCGTACGGCTGATGCATTTGGAGCTAGTG
CTATTTTTACTATAAACAACTGTGTAGATGTTTTTAATCCAAAGGTTTTAAGAGCATCCATGGGGTCTATTTTTCACATT
CCTGTCATAGTTACTGCTTCACAAATTTTGTTAAAACTTAAGCAAAGAGGAATAAAAGTTTTTGCAACTCACTTAAAAGC
TCGGAAATTAGTTCATGAGTGCAATATTTCGGATAAAGTAGCTTTTGTTTTGGGGAATGAAGCGAAAGGTGTCAGTGTTG
TAGACCTGGTAGATGACTTTGTAAAAATACCCATGACAGGGGAGGCAGAGTCTTTAAATGTTTCAATCGCTGCTGGTATA
TTTTTATACGAATCTCAAAGGCAGAGGTTGATAAAAAATAATTAG

Upstream 100 bases:

>100_bases
GCTTTCGAAGAATTAGTAAATATAGCTAAGCAGCATTTAAACGCATAAGGCCAGTTTTTTGGCCTTTTGCTTTAACTAAT
TTTATAAAAGAGTGGTGGGA

Downstream 100 bases:

>100_bases
GATGGTATAATTTTAAAAAAATATTGCAAAATGCTATGAAGGAGTAAAGTACATTATCGAAAATCACAGGGAGATAACAC
CGCAGACTGAAAGTGTTATC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLITSENNDLIKKIKKLKDKKGRYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEGVKIDIPTGNFKIVHTTERVFKKISD
TVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHI
PVIVTASQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGVSVVDLVDDFVKIPMTGEAESLNVSIAAGI
FLYESQRQRLIKNN

Sequences:

>Translated_254_residues
MLITSENNDLIKKIKKLKDKKGRYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEGVKIDIPTGNFKIVHTTERVFKKISD
TVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHI
PVIVTASQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGVSVVDLVDDFVKIPMTGEAESLNVSIAAGI
FLYESQRQRLIKNN
>Mature_254_residues
MLITSENNDLIKKIKKLKDKKGRYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEGVKIDIPTGNFKIVHTTERVFKKISD
TVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHI
PVIVTASQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGVSVVDLVDDFVKIPMTGEAESLNVSIAAGI
FLYESQRQRLIKNN

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=163, Percent_Identity=34.3558282208589, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1790623, Length=245, Percent_Identity=25.3061224489796, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790083, Length=150, Percent_Identity=28.6666666666667, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666840, Length=274, Percent_Identity=26.2773722627737, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28281; Mature: 28281

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITSENNDLIKKIKKLKDKKGRYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEGVKIDI
CEEECCCCHHHHHHHHHHHHCCCHHHCEEEEECHHHHHHHHHCCCCEEEEEECCCEEEEE
PTGNFKIVHTTERVFKKISDTVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNL
CCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCCCCC
GTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIVTASQILLKLKQRGIKV
CCEEEECCCCCCEEEEEEHHHHHHCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHH
FATHLKARKLVHECNISDKVAFVLGNEAKGVSVVDLVDDFVKIPMTGEAESLNVSIAAGI
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEE
FLYESQRQRLIKNN
EEEEHHHHHHCCCC
>Mature Secondary Structure
MLITSENNDLIKKIKKLKDKKGRYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEGVKIDI
CEEECCCCHHHHHHHHHHHHCCCHHHCEEEEECHHHHHHHHHCCCCEEEEEECCCEEEEE
PTGNFKIVHTTERVFKKISDTVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNL
CCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCCCCC
GTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIVTASQILLKLKQRGIKV
CCEEEECCCCCCEEEEEEHHHHHHCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHH
FATHLKARKLVHECNISDKVAFVLGNEAKGVSVVDLVDDFVKIPMTGEAESLNVSIAAGI
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEE
FLYESQRQRLIKNN
EEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]