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The map label for this gene is ydcP [H]

Identifier: 167040670

GI number: 167040670

Start: 2058212

End: 2060563

Strand: Reverse

Name: ydcP [H]

Synonym: Teth514_2047

Alternate gene names: 167040670

Gene position: 2060563-2058212 (Counterclockwise)

Preceding gene: 167040671

Following gene: 167040669

Centisome position: 83.86

GC content: 32.31

Gene sequence:

>2352_bases
ATGAAAAAAGTTGAATTATTAGCTCCAGCAGGAGATTATGAGGCTTTAACGAGTGCAGTTAATGCAGGATGCGATGCAGT
GTATCTAGGAGGAAAAAATTTTGGTGCAAGAGCTTATGCAACCAATTTTGACTATGATGATTTAAAATCTGCTGTAGAAT
TCTGCCATTTAAGAGATGTCAAGGTATACGTTACTGTAAATACCCTTGTAGCGAATGAAGAATTTGAAAAGCTGGTCAAC
TATTTAGATTTTTTGTATTCTATAGGTGTTGATGCAGTTATAGTGCAGGATATGGGAGTATTAAAGTTTTTACGAGAAAA
TTATCCTGATTTAAAAGTTCATGCCAGTACACAAATGACAGTTCATAATTTAGAAGGAGTACAAGAATTAGCTGAAAAGG
GAGTTTCCCGGGTTATTTTATCAAGAGAGCTCACATTAAAGGAAATAAAGGATATAGTTCAAAATTCTAACATTGAAATA
GAAGTCTTTGTTCATGGAGCCCTCTGCGTCAGTTATTCTGGACAATGCTTTATGAGTAGTATACTAGGAGGAAGAAGCGG
AAACAGGGGAAGATGTGCACAACCCTGCCGTTTAAAGTATTCTCTTGTAGATAAAGAGGGAAAAGTTTTAGAAAAGGATT
TACACCTTTTGAGTATGGCGGATTTATGTACTATAGAACATATACCAAAACTCATTGAGGCGGGAATCACTTCTTTTAAA
ATAGAAGGTAGGATGAAAAATGCCGAGTACGTCGCTTCTGTTGTAAAAGCCTACAGAGAAGCTATTGACAGTTTTTATGA
AGGAAGGACTTTTGATTCAGGTAAAGCTATAGAAGAGATGTCTCGAATTTTTAATAGAGGATTTTCTACTGGCTATCTTT
TTGGGGTTAAACCCTCCAAAATGAGTTATCTTTCACCTAAAAACACGGGAGTTGCTGCTGCAGAAGTGATAAGTGTAACT
TCAAAAACTTCAAGACTGAGGCTTTTAAGGGATATTGCAAAAGGTGATGGAATTTCTAATGAAAAAGGAGAAAAAGGACA
AAAAGTTGAAATAATATTTAAAAATGGGAAGAAGGTAGATAGAGCTTATGAAGGAGACATAATAGAACTACCTCTTAAGT
TTTATGTAAAAGAAGGAGAAATATTAAATAAAACTTATGATGTATTGTTAAATGACAAGCTGAAAAACTTACTTTCTAAA
AAGATTCCTATAAAAATTTATGCGGAGTTAAAAAAGGACAAACCTTTGTATATAAAGATACAAGAAGGAATTCATACAGT
AGAAGTTTATAGTGATGAAATAAGTCAGATAGCAGAAAAAGTTTCTATTGAGGAAGATTTTTTGAAGGATAAACTTACTC
AAATAAATGACACAGCCTTCTACGTAGAAGAAATAGAAGTAGTAGTTGAAAAAGGCCTTTACATGTCTGTAAAGGGAATA
AAAGAGGCGCGAAGAAAAGCAATAGAAATGTTAGAAAAGAAAAAGTTAGAGTATTACAGAAGAGAAGAAAAACACACCTT
TTTTAGTCTACTTCCTTTTAAAGAGAAAAAGGAAAAAGTGAGTTTAACTTTTTATACTGATAAAGTTGAGCACTTGAAGA
TAGCCAGCCAATTGGGTATAGAATACGTCTATTTCAATTACAAGCTTGATATAAAACTTTTAAAAAAAGGTTTAGAACTG
ACAAAAGATTCAAAGACAACGGTTATACCTGCTTTTCCTTCTATATTGAGGGAAGAGATAAAAAGAATAAAGCCTCAATT
AGAATTTTTACAAGATATGGGGATAAACAAAATTTTGGTTTCAAATTTAGGGCTTTATCATATTGCAAAAAATTATGACT
TTGAGATATTTATAGATTATCCTTTAAATATTTTCAACAATTTAGCTGTAGATTACGTTAAACCTTACGCTGTGACTTTA
TCTTATGAACTTACGCTGGAGCAGATTAAAGATATTGCCAAAAGAAGTGATGTAAAATTTGAAGCTTTAATATACGGTAG
ACTGCCTCTTATGACAATGGAATATTGTCCAATAAGGAATTTAGTAGGCTGTGACAGAGAAAGGTGTGAAAAAGGTTATT
ATTTTCTAAAAGACAGAAAAGGCAAATTAATGCCTCTTAAAAGCAATGGTTTTTGCAGGATGCAGATTTTAAACGCAGAT
GTGCTTTTAATGTTAAGCATAAAGGAGCTTAAACAAGCTGGACTTTCTTTTTTGAGGATACATGATACAATAGAAGAAGA
TGAAGAAATAGAGAAAGTTTTAAAAATGCATATTGAAGCTTTAAAAGGGAATGAAATTGAAATTTTAGAAGGAAAATATA
CAAAAGGACATTTTTACAGAGGAGTTTTGTGA

Upstream 100 bases:

>100_bases
GAGGAGGAGCTTACTAAAACTAAACAACAGCTTTTAGAGACAGAGGAAGAGTTTCGGCAGTTTATAGAAACTTTTGATGA
AGAAAAGTAAAGGTGATTGG

Downstream 100 bases:

>100_bases
TGGTGAGGGGAATTAATAGTAGAGCAATAAAAAGTCTTGAATTTGACAAGATAGTGGAGTTTATTGTTGGCTATTGTGAT
TCGGATTTAGGCAAACAAAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MKKVELLAPAGDYEALTSAVNAGCDAVYLGGKNFGARAYATNFDYDDLKSAVEFCHLRDVKVYVTVNTLVANEEFEKLVN
YLDFLYSIGVDAVIVQDMGVLKFLRENYPDLKVHASTQMTVHNLEGVQELAEKGVSRVILSRELTLKEIKDIVQNSNIEI
EVFVHGALCVSYSGQCFMSSILGGRSGNRGRCAQPCRLKYSLVDKEGKVLEKDLHLLSMADLCTIEHIPKLIEAGITSFK
IEGRMKNAEYVASVVKAYREAIDSFYEGRTFDSGKAIEEMSRIFNRGFSTGYLFGVKPSKMSYLSPKNTGVAAAEVISVT
SKTSRLRLLRDIAKGDGISNEKGEKGQKVEIIFKNGKKVDRAYEGDIIELPLKFYVKEGEILNKTYDVLLNDKLKNLLSK
KIPIKIYAELKKDKPLYIKIQEGIHTVEVYSDEISQIAEKVSIEEDFLKDKLTQINDTAFYVEEIEVVVEKGLYMSVKGI
KEARRKAIEMLEKKKLEYYRREEKHTFFSLLPFKEKKEKVSLTFYTDKVEHLKIASQLGIEYVYFNYKLDIKLLKKGLEL
TKDSKTTVIPAFPSILREEIKRIKPQLEFLQDMGINKILVSNLGLYHIAKNYDFEIFIDYPLNIFNNLAVDYVKPYAVTL
SYELTLEQIKDIAKRSDVKFEALIYGRLPLMTMEYCPIRNLVGCDRERCEKGYYFLKDRKGKLMPLKSNGFCRMQILNAD
VLLMLSIKELKQAGLSFLRIHDTIEEDEEIEKVLKMHIEALKGNEIEILEGKYTKGHFYRGVL

Sequences:

>Translated_783_residues
MKKVELLAPAGDYEALTSAVNAGCDAVYLGGKNFGARAYATNFDYDDLKSAVEFCHLRDVKVYVTVNTLVANEEFEKLVN
YLDFLYSIGVDAVIVQDMGVLKFLRENYPDLKVHASTQMTVHNLEGVQELAEKGVSRVILSRELTLKEIKDIVQNSNIEI
EVFVHGALCVSYSGQCFMSSILGGRSGNRGRCAQPCRLKYSLVDKEGKVLEKDLHLLSMADLCTIEHIPKLIEAGITSFK
IEGRMKNAEYVASVVKAYREAIDSFYEGRTFDSGKAIEEMSRIFNRGFSTGYLFGVKPSKMSYLSPKNTGVAAAEVISVT
SKTSRLRLLRDIAKGDGISNEKGEKGQKVEIIFKNGKKVDRAYEGDIIELPLKFYVKEGEILNKTYDVLLNDKLKNLLSK
KIPIKIYAELKKDKPLYIKIQEGIHTVEVYSDEISQIAEKVSIEEDFLKDKLTQINDTAFYVEEIEVVVEKGLYMSVKGI
KEARRKAIEMLEKKKLEYYRREEKHTFFSLLPFKEKKEKVSLTFYTDKVEHLKIASQLGIEYVYFNYKLDIKLLKKGLEL
TKDSKTTVIPAFPSILREEIKRIKPQLEFLQDMGINKILVSNLGLYHIAKNYDFEIFIDYPLNIFNNLAVDYVKPYAVTL
SYELTLEQIKDIAKRSDVKFEALIYGRLPLMTMEYCPIRNLVGCDRERCEKGYYFLKDRKGKLMPLKSNGFCRMQILNAD
VLLMLSIKELKQAGLSFLRIHDTIEEDEEIEKVLKMHIEALKGNEIEILEGKYTKGHFYRGVL
>Mature_783_residues
MKKVELLAPAGDYEALTSAVNAGCDAVYLGGKNFGARAYATNFDYDDLKSAVEFCHLRDVKVYVTVNTLVANEEFEKLVN
YLDFLYSIGVDAVIVQDMGVLKFLRENYPDLKVHASTQMTVHNLEGVQELAEKGVSRVILSRELTLKEIKDIVQNSNIEI
EVFVHGALCVSYSGQCFMSSILGGRSGNRGRCAQPCRLKYSLVDKEGKVLEKDLHLLSMADLCTIEHIPKLIEAGITSFK
IEGRMKNAEYVASVVKAYREAIDSFYEGRTFDSGKAIEEMSRIFNRGFSTGYLFGVKPSKMSYLSPKNTGVAAAEVISVT
SKTSRLRLLRDIAKGDGISNEKGEKGQKVEIIFKNGKKVDRAYEGDIIELPLKFYVKEGEILNKTYDVLLNDKLKNLLSK
KIPIKIYAELKKDKPLYIKIQEGIHTVEVYSDEISQIAEKVSIEEDFLKDKLTQINDTAFYVEEIEVVVEKGLYMSVKGI
KEARRKAIEMLEKKKLEYYRREEKHTFFSLLPFKEKKEKVSLTFYTDKVEHLKIASQLGIEYVYFNYKLDIKLLKKGLEL
TKDSKTTVIPAFPSILREEIKRIKPQLEFLQDMGINKILVSNLGLYHIAKNYDFEIFIDYPLNIFNNLAVDYVKPYAVTL
SYELTLEQIKDIAKRSDVKFEALIYGRLPLMTMEYCPIRNLVGCDRERCEKGYYFLKDRKGKLMPLKSNGFCRMQILNAD
VLLMLSIKELKQAGLSFLRIHDTIEEDEEIEKVLKMHIEALKGNEIEILEGKYTKGHFYRGVL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=527, Percent_Identity=33.0170777988615, Blast_Score=281, Evalue=1e-76,
Organism=Escherichia coli, GI1788397, Length=340, Percent_Identity=32.0588235294118, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=32.7645051194539, Blast_Score=154, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 89482; Mature: 89482

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVELLAPAGDYEALTSAVNAGCDAVYLGGKNFGARAYATNFDYDDLKSAVEFCHLRDV
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCE
KVYVTVNTLVANEEFEKLVNYLDFLYSIGVDAVIVQDMGVLKFLRENYPDLKVHASTQMT
EEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCEEEEECCEEE
VHNLEGVQELAEKGVSRVILSRELTLKEIKDIVQNSNIEIEVFVHGALCVSYSGQCFMSS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHH
ILGGRSGNRGRCAQPCRLKYSLVDKEGKVLEKDLHLLSMADLCTIEHIPKLIEAGITSFK
HHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IEGRMKNAEYVASVVKAYREAIDSFYEGRTFDSGKAIEEMSRIFNRGFSTGYLFGVKPSK
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
MSYLSPKNTGVAAAEVISVTSKTSRLRLLRDIAKGDGISNEKGEKGQKVEIIFKNGKKVD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
RAYEGDIIELPLKFYVKEGEILNKTYDVLLNDKLKNLLSKKIPIKIYAELKKDKPLYIKI
HHCCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEE
QEGIHTVEVYSDEISQIAEKVSIEEDFLKDKLTQINDTAFYVEEIEVVVEKGLYMSVKGI
ECCCEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHH
KEARRKAIEMLEKKKLEYYRREEKHTFFSLLPFKEKKEKVSLTFYTDKVEHLKIASQLGI
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEEEEEEECCHHHHHHHHHCCE
EYVYFNYKLDIKLLKKGLELTKDSKTTVIPAFPSILREEIKRIKPQLEFLQDMGINKILV
EEEEEEEEEEHHHHHCCHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEHH
SNLGLYHIAKNYDFEIFIDYPLNIFNNLAVDYVKPYAVTLSYELTLEQIKDIAKRSDVKF
HCCCEEEEECCCCEEEEECCCHHHHHCHHHHEECCEEEEEEEEEEHHHHHHHHHHCCCEE
EALIYGRLPLMTMEYCPIRNLVGCDRERCEKGYYFLKDRKGKLMPLKSNGFCRMQILNAD
EEEEECCCCCEEECCCCCCHHHCCCHHHHHCCCEEEECCCCCEEEECCCCEEEEEEECCC
VLLMLSIKELKQAGLSFLRIHDTIEEDEEIEKVLKMHIEALKGNEIEILEGKYTKGHFYR
EEEEEEHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEC
GVL
CCC
>Mature Secondary Structure
MKKVELLAPAGDYEALTSAVNAGCDAVYLGGKNFGARAYATNFDYDDLKSAVEFCHLRDV
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCE
KVYVTVNTLVANEEFEKLVNYLDFLYSIGVDAVIVQDMGVLKFLRENYPDLKVHASTQMT
EEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCEEEEECCEEE
VHNLEGVQELAEKGVSRVILSRELTLKEIKDIVQNSNIEIEVFVHGALCVSYSGQCFMSS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHH
ILGGRSGNRGRCAQPCRLKYSLVDKEGKVLEKDLHLLSMADLCTIEHIPKLIEAGITSFK
HHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IEGRMKNAEYVASVVKAYREAIDSFYEGRTFDSGKAIEEMSRIFNRGFSTGYLFGVKPSK
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
MSYLSPKNTGVAAAEVISVTSKTSRLRLLRDIAKGDGISNEKGEKGQKVEIIFKNGKKVD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
RAYEGDIIELPLKFYVKEGEILNKTYDVLLNDKLKNLLSKKIPIKIYAELKKDKPLYIKI
HHCCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEE
QEGIHTVEVYSDEISQIAEKVSIEEDFLKDKLTQINDTAFYVEEIEVVVEKGLYMSVKGI
ECCCEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHH
KEARRKAIEMLEKKKLEYYRREEKHTFFSLLPFKEKKEKVSLTFYTDKVEHLKIASQLGI
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEEEEEEECCHHHHHHHHHCCE
EYVYFNYKLDIKLLKKGLELTKDSKTTVIPAFPSILREEIKRIKPQLEFLQDMGINKILV
EEEEEEEEEEHHHHHCCHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEHH
SNLGLYHIAKNYDFEIFIDYPLNIFNNLAVDYVKPYAVTLSYELTLEQIKDIAKRSDVKF
HCCCEEEEECCCCEEEEECCCHHHHHCHHHHEECCEEEEEEEEEEHHHHHHHHHHCCCEE
EALIYGRLPLMTMEYCPIRNLVGCDRERCEKGYYFLKDRKGKLMPLKSNGFCRMQILNAD
EEEEECCCCCEEECCCCCCHHHCCCHHHHHCCCEEEECCCCCEEEECCCCEEEEEEECCC
VLLMLSIKELKQAGLSFLRIHDTIEEDEEIEKVLKMHIEALKGNEIEILEGKYTKGHFYR
EEEEEEHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEC
GVL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]