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The map label for this gene is xerD [C]

Identifier: 167040193

GI number: 167040193

Start: 1578048

End: 1578920

Strand: Direct

Name: xerD [C]

Synonym: Teth514_1555

Alternate gene names: 167040193

Gene position: 1578048-1578920 (Clockwise)

Preceding gene: 167040192

Following gene: 167040194

Centisome position: 64.22

GC content: 28.87

Gene sequence:

>873_bases
ATGTTAAATAATGTGGTTGGGGAGTTTCTGGATTTTCTAAAAAAGAACAAAAAACTGTCCAAAAACACTCTAGAATCTTA
TAACAGAGACATAAAACAATTTTTAAATTATCTTGAAGAAATCGAATTTGAATATTATAATGTCAAAAAATCGACAATAT
TAAATTATCTTTATTACTTGAAGAAAAAAGGAAAATCACAAGCAACTGTTTCGCGAAATCTTTCTTCTCTTAAAGCCTTT
TATCATTATCTATTTATGAAAAAGAAAATAGAAGAAGACCCAACATACATGATTAATACCCCGAAAGTAGAAAAAAAGCC
GCCTGCTACTTTAACAGTTGAACAGGTAGATATGTTACTTTCAATAGACTTTGGGAATGATGAAAAAGGACTTAGAGATA
AGGCTCTTATTGAATTACTTTATGCTACAGGACTTAAAGTCTCTGAAGTTATTTCTTTAAAATTAGAAGATGTGAATCTC
TCTTATGGTTATGTAGTTATTCGTTCTAATAAAGAAAGAGTTATTCCTATAGGCTCTCATGCAATTGAAGCTTTAAAAAA
TTATATTGAAAAAGGAAGAAAAGCAAAAAATGGAGAAAATACTCTTTTTTTAAATTTGCGTGGAGAAAAACTTACAAGAC
AGGGATGTTGGAAAATAATAAGAGAATACACTGATAAAATTAATCCTGGATTTCCTGTTACTCCAAATACATTAAGACAA
TCTTTTGCGCAACATATGCTTCAAAATGGTGCGGATATTAGAGCTGTCCAAGAAATGTTAGGGTATCAAACAGATCTAAA
TACAAATTTACTTTCTTTAATTTCAAAATCGAAAATAAAAGAAGTATATAATAAATTTCACCCTCGTGCTTAA

Upstream 100 bases:

>100_bases
CGATTTTTTCACCATAAAAGAAGGAAAATGACGATTTATGTTGAATATTTATAATTAAATGCTTTATTATAAAAATTCAT
GAATTGTAGGGGTAAAGAAT

Downstream 100 bases:

>100_bases
AAATATAAAAAGTATAATATTCACCCTCCAGCGCAAAATAAATAGTGATGAGGAGGGTGATTTTATGTTTAAAAGGCTTT
TAACATTATTAGTGAGTGTG

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLNNVVGEFLDFLKKNKKLSKNTLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAF
YHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNL
SYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ
SFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA

Sequences:

>Translated_290_residues
MLNNVVGEFLDFLKKNKKLSKNTLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAF
YHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNL
SYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ
SFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA
>Mature_290_residues
MLNNVVGEFLDFLKKNKKLSKNTLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAF
YHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNL
SYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ
SFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA

Specific function: Potential site-specific tyrosine recombinase, which may act by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregatio

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=32.7645051194539, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=28.7671232876712, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790768, Length=159, Percent_Identity=29.559748427673, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33613; Mature: 33613

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNVVGEFLDFLKKNKKLSKNTLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KKKGKSQATVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHEEE
SIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSH
EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHEEEEEEECCEEEEEEEECCCCEEEECCHH
AIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ
HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
SFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA
HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNNVVGEFLDFLKKNKKLSKNTLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KKKGKSQATVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHEEE
SIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSH
EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHEEEEEEECCEEEEEEEECCCCEEEECCHH
AIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ
HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
SFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA
HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]