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The map label for this gene is ynbA [H]

Identifier: 167040081

GI number: 167040081

Start: 1479156

End: 1480397

Strand: Direct

Name: ynbA [H]

Synonym: Teth514_1441

Alternate gene names: 167040081

Gene position: 1479156-1480397 (Clockwise)

Preceding gene: 167040080

Following gene: 167040083

Centisome position: 60.2

GC content: 32.93

Gene sequence:

>1242_bases
ATGGAGGAATTAAATAGAGAAGAATATAAAGAACGAGCTATTTTAGTAGGAATTGTTTCTACACCTGAAGATGAGGAAAG
TATGGAGGAATTAAAGGAGCTTGCTTTAACAGCTGGAGCTGAAGTAGTAGGAATAATGACACAAAAGCGCAATACAATTG
ACAAAGCTCACTATATTGGTAAAGGAAAGCTGGAAGAATTAAAATTCTTTGTTGAAAATCAAGAAGTTGACCTTGTCATT
GTCAATGATGAACTTACCGGTACACAAATTAAAAATATAGAAGACTTTTTAAATGTAAAAGTTATTGATAGAACAAATCT
TATCCTTGATATATTTGCAAAAAGAGCAAAGTCAAGAGAAGGAATGTTACAAGTTGAATTAGCTCAATTAAAGTATCGCT
TGCCCCGACTTGTAGGTCTTGGTGGACAACTTTCAAGATTAGGTGGTGGAATAGGTACAAGGGGTCCTGGTGAGACAAAA
TTAGAGACAGATAGAAGGCATATAAAGAATAGAATAAAAGCGATAGAAAAGAAGTTAGAAGAAATAGAAAGGCATAGAAG
TTTACAAAGGGAAAGGCGTAAGAAAAACCGTATTCCTGTGATAGCGATAGTAGGGTATACAAATGCAGGAAAATCCACGC
TGCTTAATGCTTTAACTAATGCGGAAGTGTACGTAGAAGATAAATTATTTGCAACCCTTGACCCTACTGCGCGAAGACTT
GTTTTGCCTTCAGGGAGAGAAGTGATTTTGATTGATACTGTAGGTTTTATTAGAAAATTGCCCCACGACCTAGTGGAAGC
TTTTAAATCTACATTGGAAGAGGCTAAATATGCAGATCTATTGCTTCATGTAATTGATGTGACTTCGCCAGATATGGAGG
AAAAGATAAAGGTTGTAGAAAAGGTTCTTTCAGATTTAGATGTTATTAATACTCCAAGAATAAATGTTTTTAATAAAATT
GACCTTTTAGATGTAGTGCCAAAAGGGAATGAAAAAGAAATTTACATTTCTGCTAAAAACAAAATAGGACTTGATAAATT
ATTGCAGGCAATAGAAAAAGAGATTTTTAAAGACGTAGAAATAGTTAATTTCCTCCTGCCTTATGATAAAACCAAAGAAT
ACAATTATTTAAAAGAAAAAACAAAAGTCATTGAAGAAAGTTATGATGAAAAAGGGATAATAATAAAAGCGGAGGTACAA
AAAGAAACAAAAGAAAGATTTAAAGATTTTATCATCGTTTAA

Upstream 100 bases:

>100_bases
GAAGGCTCCTTTTTATCTGGAACCATAATTTAAAAAGAATTGCTTTTTGTCTAAAAATAAAATATATTATAGTTACAAAG
TTTTTTAGGCTGGTGATGTT

Downstream 100 bases:

>100_bases
TAGCATTGTATTCTGCTTTTTCTTGAGCTTTTACATTTTTAACTATTTGAACAATTTTTTTATAAGCTTTTTGCGTACCA
TAAATGACTAAAGGCCTTCC

Product: small GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MEELNREEYKERAILVGIVSTPEDEESMEELKELALTAGAEVVGIMTQKRNTIDKAHYIGKGKLEELKFFVENQEVDLVI
VNDELTGTQIKNIEDFLNVKVIDRTNLILDIFAKRAKSREGMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETK
LETDRRHIKNRIKAIEKKLEEIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRL
VLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDMEEKIKVVEKVLSDLDVINTPRINVFNKI
DLLDVVPKGNEKEIYISAKNKIGLDKLLQAIEKEIFKDVEIVNFLLPYDKTKEYNYLKEKTKVIEESYDEKGIIIKAEVQ
KETKERFKDFIIV

Sequences:

>Translated_413_residues
MEELNREEYKERAILVGIVSTPEDEESMEELKELALTAGAEVVGIMTQKRNTIDKAHYIGKGKLEELKFFVENQEVDLVI
VNDELTGTQIKNIEDFLNVKVIDRTNLILDIFAKRAKSREGMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETK
LETDRRHIKNRIKAIEKKLEEIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRL
VLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDMEEKIKVVEKVLSDLDVINTPRINVFNKI
DLLDVVPKGNEKEIYISAKNKIGLDKLLQAIEKEIFKDVEIVNFLLPYDKTKEYNYLKEKTKVIEESYDEKGIIIKAEVQ
KETKERFKDFIIV
>Mature_413_residues
MEELNREEYKERAILVGIVSTPEDEESMEELKELALTAGAEVVGIMTQKRNTIDKAHYIGKGKLEELKFFVENQEVDLVI
VNDELTGTQIKNIEDFLNVKVIDRTNLILDIFAKRAKSREGMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETK
LETDRRHIKNRIKAIEKKLEEIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRL
VLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDMEEKIKVVEKVLSDLDVINTPRINVFNKI
DLLDVVPKGNEKEIYISAKNKIGLDKLLQAIEKEIFKDVEIVNFLLPYDKTKEYNYLKEKTKVIEESYDEKGIIIKAEVQ
KETKERFKDFIIV

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133118, Length=235, Percent_Identity=36.1702127659575, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI310133116, Length=219, Percent_Identity=36.986301369863, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI310124269, Length=211, Percent_Identity=37.4407582938389, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI310124267, Length=211, Percent_Identity=37.4407582938389, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI310124171, Length=211, Percent_Identity=37.4407582938389, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI310124169, Length=211, Percent_Identity=37.4407582938389, Blast_Score=137, Evalue=2e-32,
Organism=Escherichia coli, GI1790615, Length=399, Percent_Identity=41.8546365914787, Blast_Score=302, Evalue=3e-83,
Organism=Caenorhabditis elegans, GI17561038, Length=332, Percent_Identity=31.9277108433735, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24650079, Length=384, Percent_Identity=31.5104166666667, Blast_Score=144, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47249; Mature: 47249

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELNREEYKERAILVGIVSTPEDEESMEELKELALTAGAEVVGIMTQKRNTIDKAHYIG
CCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEEHHHCCCHHHHHHHCC
KGKLEELKFFVENQEVDLVIVNDELTGTQIKNIEDFLNVKVIDRTNLILDIFAKRAKSRE
CCCHHHHHHHCCCCCEEEEEECCCCCCCHHHCHHHHHCEEEECCCHHHHHHHHHHHCCCC
GMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIKAIEKKLE
CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRL
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCEEEEECCCCCEE
VLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDMEEKIKVVE
ECCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KVLSDLDVINTPRINVFNKIDLLDVVPKGNEKEIYISAKNKIGLDKLLQAIEKEIFKDVE
HHHHHCCCCCCCCCCEECCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
IVNFLLPYDKTKEYNYLKEKTKVIEESYDEKGIIIKAEVQKETKERFKDFIIV
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEELNREEYKERAILVGIVSTPEDEESMEELKELALTAGAEVVGIMTQKRNTIDKAHYIG
CCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEEHHHCCCHHHHHHHCC
KGKLEELKFFVENQEVDLVIVNDELTGTQIKNIEDFLNVKVIDRTNLILDIFAKRAKSRE
CCCHHHHHHHCCCCCEEEEEECCCCCCCHHHCHHHHHCEEEECCCHHHHHHHHHHHCCCC
GMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETKLETDRRHIKNRIKAIEKKLE
CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EIERHRSLQRERRKKNRIPVIAIVGYTNAGKSTLLNALTNAEVYVEDKLFATLDPTARRL
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCEEEEECCCCCEE
VLPSGREVILIDTVGFIRKLPHDLVEAFKSTLEEAKYADLLLHVIDVTSPDMEEKIKVVE
ECCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KVLSDLDVINTPRINVFNKIDLLDVVPKGNEKEIYISAKNKIGLDKLLQAIEKEIFKDVE
HHHHHCCCCCCCCCCEECCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
IVNFLLPYDKTKEYNYLKEKTKVIEESYDEKGIIIKAEVQKETKERFKDFIIV
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]