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The map label for this gene is ydeM [C]

Identifier: 167039016

GI number: 167039016

Start: 359936

End: 361219

Strand: Direct

Name: ydeM [C]

Synonym: Teth514_0349

Alternate gene names: 167039016

Gene position: 359936-361219 (Clockwise)

Preceding gene: 167039015

Following gene: 167039017

Centisome position: 14.65

GC content: 29.98

Gene sequence:

>1284_bases
ATGCATATTGAAAAAAATGAAAGAATAGAGTTACCTCTCACTTTTGGAGAAGATGTGAGGGAAATAGAAATTAAAGGAGT
ATATTTTTTGGTTAATCTCAAAGAAAAAACATGGCTTGCTATCAATAAAAAAGGGAAAGAGTTCTTAACAAAGTTAAGAC
AGGGGTATATTTTTAATAAGCTTAAAAAGGAGGAAAAGGAGTTAATTAGCATTTTACATGAGTTGCATATTATTAAAGGT
GTTAAGCATTGTGAGGGAATACAAAAGATAGGTCCAACGATAGCTTACTTTCATATTACTCAACGTTGTAATTTAAATTG
TCCGACGTGCTTTACGTTTTCACCTAAAAGAAACAAATTAAATGACATGCCTACTGAAAAAGTAAAAGAAGTTCTGCGAA
AAATAAAAGAATTTGGCATTAATGAAGTAATTTTTTCTGGGGGAGAACCATTTTTAAGAGAAGATTTTATTAAAATTTTG
GAAGAATCAAAAAAATTATCACTTAGTGTTGTAGTTTTAACGAATGGTACTCTAATTAATAAGGAGATAGCAAACAAAAT
TAAGGGTACAGTTGATGAAGTTTACATTTCTTTAGATGGAGTTAATGAAGAAATTTATGGTAGATTACGTGGAAAAGAAA
ATTTTAAAAAAGTAATTAATGCTATTGATTACTTAAAAAGTGAAAATATTAATATTAGTTTACTTCCTACAATTACATCT
ATTAATTTTGAGTTTATTGATCAGTTTAAAGAATTTTCGGATGAAATTAAGTGCCCTATCAACTACAGCCTTTTTGTTCC
CATTGGTGCTGGTTTTTATAATACGGACTTAGCATTAAACGAAAACCAATTAGTAGATTTTGCTAAATGGATTGCAAACC
AAAACAATGTGAGAAACTTTAGTGAAAGTAGTAAAATAAAGGGGAAAAGTATGGTTGGTGAAATTTCAATACGCAAAGGA
TGTGGCCTGGGGGAGGGTAATGAAATAAGTATAGATGCCGATGGTACAATTTATTGCTGTCATCTTTTACACTATTCTAA
GTATAAATTAGGTGAGTTGCCAAGAAGCAATTTGGAAGAAATTTTAAGTTTGAAGACAAAATTATGTGAAGGTTGTTTGG
TTGATGAACTTGAAAGTTGCAAAAACTGTAATTACAGGTATTTTTGTGGCGGTGGTTGTCGAGCACATGCATTAATTAAA
ACAGGAAGTCTTCAAGGTAAAGATCCACATTGTATTTTTTATCGCACTTTTTTAGATGAAGCTTTTTCCAATTTTTTACT
TTAA

Upstream 100 bases:

>100_bases
AGAGATATAACAGATTGCGGTGCAGAATGTTTTTCTTTTGGGTTGCTGTGGAGATGAAGACTTAATATGAAAGGTATGTT
GAGAGAGGGGAGAAATTAAA

Downstream 100 bases:

>100_bases
AGTTTTCGATTTTTCCTTTCTTTATAGATACTTGAATTGGTTGATAACGCTCATTTTGAGTGTTTCTGCAAATAGCTAAT
TAACTTCTAAAGGAGTAGCG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MHIEKNERIELPLTFGEDVREIEIKGVYFLVNLKEKTWLAINKKGKEFLTKLRQGYIFNKLKKEEKELISILHELHIIKG
VKHCEGIQKIGPTIAYFHITQRCNLNCPTCFTFSPKRNKLNDMPTEKVKEVLRKIKEFGINEVIFSGGEPFLREDFIKIL
EESKKLSLSVVVLTNGTLINKEIANKIKGTVDEVYISLDGVNEEIYGRLRGKENFKKVINAIDYLKSENINISLLPTITS
INFEFIDQFKEFSDEIKCPINYSLFVPIGAGFYNTDLALNENQLVDFAKWIANQNNVRNFSESSKIKGKSMVGEISIRKG
CGLGEGNEISIDADGTIYCCHLLHYSKYKLGELPRSNLEEILSLKTKLCEGCLVDELESCKNCNYRYFCGGGCRAHALIK
TGSLQGKDPHCIFYRTFLDEAFSNFLL

Sequences:

>Translated_427_residues
MHIEKNERIELPLTFGEDVREIEIKGVYFLVNLKEKTWLAINKKGKEFLTKLRQGYIFNKLKKEEKELISILHELHIIKG
VKHCEGIQKIGPTIAYFHITQRCNLNCPTCFTFSPKRNKLNDMPTEKVKEVLRKIKEFGINEVIFSGGEPFLREDFIKIL
EESKKLSLSVVVLTNGTLINKEIANKIKGTVDEVYISLDGVNEEIYGRLRGKENFKKVINAIDYLKSENINISLLPTITS
INFEFIDQFKEFSDEIKCPINYSLFVPIGAGFYNTDLALNENQLVDFAKWIANQNNVRNFSESSKIKGKSMVGEISIRKG
CGLGEGNEISIDADGTIYCCHLLHYSKYKLGELPRSNLEEILSLKTKLCEGCLVDELESCKNCNYRYFCGGGCRAHALIK
TGSLQGKDPHCIFYRTFLDEAFSNFLL
>Mature_427_residues
MHIEKNERIELPLTFGEDVREIEIKGVYFLVNLKEKTWLAINKKGKEFLTKLRQGYIFNKLKKEEKELISILHELHIIKG
VKHCEGIQKIGPTIAYFHITQRCNLNCPTCFTFSPKRNKLNDMPTEKVKEVLRKIKEFGINEVIFSGGEPFLREDFIKIL
EESKKLSLSVVVLTNGTLINKEIANKIKGTVDEVYISLDGVNEEIYGRLRGKENFKKVINAIDYLKSENINISLLPTITS
INFEFIDQFKEFSDEIKCPINYSLFVPIGAGFYNTDLALNENQLVDFAKWIANQNNVRNFSESSKIKGKSMVGEISIRKG
CGLGEGNEISIDADGTIYCCHLLHYSKYKLGELPRSNLEEILSLKTKLCEGCLVDELESCKNCNYRYFCGGGCRAHALIK
TGSLQGKDPHCIFYRTFLDEAFSNFLL

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=342, Percent_Identity=26.0233918128655, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28574490, Length=260, Percent_Identity=23.8461538461538, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28574488, Length=266, Percent_Identity=23.6842105263158, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 48778; Mature: 48778

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIEKNERIELPLTFGEDVREIEIKGVYFLVNLKEKTWLAINKKGKEFLTKLRQGYIFNK
CCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHCHHHHH
LKKEEKELISILHELHIIKGVKHCEGIQKIGPTIAYFHITQRCNLNCPTCFTFSPKRNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCEEEEECCCCCCC
NDMPTEKVKEVLRKIKEFGINEVIFSGGEPFLREDFIKILEESKKLSLSVVVLTNGTLIN
CCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCEEEC
KEIANKIKGTVDEVYISLDGVNEEIYGRLRGKENFKKVINAIDYLKSENINISLLPTITS
HHHHHHHCCCHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCEEC
INFEFIDQFKEFSDEIKCPINYSLFVPIGAGFYNTDLALNENQLVDFAKWIANQNNVRNF
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCCEEECCHHHHHHHHHHCCCCCCCCC
SESSKIKGKSMVGEISIRKGCGLGEGNEISIDADGTIYCCHLLHYSKYKLGELPRSNLEE
CHHHCCCCCHHEEEEEEECCCCCCCCCEEEEECCCCEEEEEHHHHCCCHHCCCCCCHHHH
ILSLKTKLCEGCLVDELESCKNCNYRYFCGGGCRAHALIKTGSLQGKDPHCIFYRTFLDE
HHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEHHHHHHH
AFSNFLL
HHHHHCC
>Mature Secondary Structure
MHIEKNERIELPLTFGEDVREIEIKGVYFLVNLKEKTWLAINKKGKEFLTKLRQGYIFNK
CCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHCHHHHH
LKKEEKELISILHELHIIKGVKHCEGIQKIGPTIAYFHITQRCNLNCPTCFTFSPKRNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCEEEEECCCCCCC
NDMPTEKVKEVLRKIKEFGINEVIFSGGEPFLREDFIKILEESKKLSLSVVVLTNGTLIN
CCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCEEEC
KEIANKIKGTVDEVYISLDGVNEEIYGRLRGKENFKKVINAIDYLKSENINISLLPTITS
HHHHHHHCCCHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCEEC
INFEFIDQFKEFSDEIKCPINYSLFVPIGAGFYNTDLALNENQLVDFAKWIANQNNVRNF
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCCEEECCHHHHHHHHHHCCCCCCCCC
SESSKIKGKSMVGEISIRKGCGLGEGNEISIDADGTIYCCHLLHYSKYKLGELPRSNLEE
CHHHCCCCCHHEEEEEEECCCCCCCCCEEEEECCCCEEEEEHHHHCCCHHCCCCCCHHHH
ILSLKTKLCEGCLVDELESCKNCNYRYFCGGGCRAHALIKTGSLQGKDPHCIFYRTFLDE
HHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEHHHHHHH
AFSNFLL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]