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The map label for this gene is cobD [H]

Identifier: 167038968

GI number: 167038968

Start: 320181

End: 321122

Strand: Direct

Name: cobD [H]

Synonym: Teth514_0301

Alternate gene names: 167038968

Gene position: 320181-321122 (Clockwise)

Preceding gene: 167038967

Following gene: 167038969

Centisome position: 13.03

GC content: 35.88

Gene sequence:

>942_bases
ATGGAAGTGGTATTAGCCTACTTATTAGATTTGTTGATAGGAGACCCTGAAGGATATCCTCATCCTGTAAGAATTATAGG
GAGAGTGGTATCACATTTAGAGAGTATACTTAGAAGATATGCTAAAAGCAACAGAGCTTTAAAAATAGCAGGTTTTATAC
TGTGTGGACTTACAGTAACTTTGGCATTTGCAGCAACATATGCACTACTTTATATTGCAGGACTTATACATCCATATTTA
AAATATGCTTTCGACGTTTTAATTATATATACCTGTCTTGCTACAAAAGACCTTGGTAAAGCTGCAGGAAAAGTATACGA
AGCCTTGACAAAAGGAGATATCACTGAGGCAAGAAAAAGGCTGTCTTACATAGTTAGTAGGGATACAGATAAACTTGATG
TTGAGAATATATCCAGAGGAGCGATAGAAACAGTTGCAGAGAATATATCAGACGGTATAATAGCCCCTATGTTTTACGCG
TTTATAGGAGGTGCGCCGCTGGCTATCTTTTATAAGGCAGCAAGCACTCTTGATTCTATGGTAGGCTATAGAAATGAAAA
GTACCTCGATTTAGGATTTGCTTCTGCAAAACTTGACGACATATTAAATTTTATCCCTGCTCGCATAACAGGTTTTTTGA
TTGTTATAGCTGCTTTTCTCTTAGGCTATGATTATAAAAATAGTTGGAGGATTTTTTTAAGAGATAGGTTTAAACATCAA
AGTCCAAACAGTGCTCACGGAGAAGCAGCAGTTGCCGGTGCTTTAAATATACAACTGGGAGGGCTTAATTATTATTTTGG
AAAGCCTGAAATTAAACCAACTCTTGGGGATGGAAAAGAAAAAATTATCCCCCAACACATAAAATACAGCATAAAAATAA
TGTATATGACTTCATTTTTAGGTCTTGTGGTGTTTTATGGGATGAAGATTTTGGTACCATAA

Upstream 100 bases:

>100_bases
AAGAATTTAAAGAAAGAGAATATGATAAGCTTGCAGATATTGTGAGAAAAAGTATCGACATGAAAAAAGTCTATGAAATT
ATGGAGAGGTATAAAGATTA

Downstream 100 bases:

>100_bases
AGGAATAACTTATAATTGCCTCAAAATATTACATAAAAACACCTAAAAATTGTAAATAGGAGGAGATTGATGTGAAAGAA
AAAGCAAATGCATTAAAAAA

Product: cobalamin biosynthesis protein CobD

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MEVVLAYLLDLLIGDPEGYPHPVRIIGRVVSHLESILRRYAKSNRALKIAGFILCGLTVTLAFAATYALLYIAGLIHPYL
KYAFDVLIIYTCLATKDLGKAAGKVYEALTKGDITEARKRLSYIVSRDTDKLDVENISRGAIETVAENISDGIIAPMFYA
FIGGAPLAIFYKAASTLDSMVGYRNEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRFKHQ
SPNSAHGEAAVAGALNIQLGGLNYYFGKPEIKPTLGDGKEKIIPQHIKYSIKIMYMTSFLGLVVFYGMKILVP

Sequences:

>Translated_313_residues
MEVVLAYLLDLLIGDPEGYPHPVRIIGRVVSHLESILRRYAKSNRALKIAGFILCGLTVTLAFAATYALLYIAGLIHPYL
KYAFDVLIIYTCLATKDLGKAAGKVYEALTKGDITEARKRLSYIVSRDTDKLDVENISRGAIETVAENISDGIIAPMFYA
FIGGAPLAIFYKAASTLDSMVGYRNEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRFKHQ
SPNSAHGEAAVAGALNIQLGGLNYYFGKPEIKPTLGDGKEKIIPQHIKYSIKIMYMTSFLGLVVFYGMKILVP
>Mature_313_residues
MEVVLAYLLDLLIGDPEGYPHPVRIIGRVVSHLESILRRYAKSNRALKIAGFILCGLTVTLAFAATYALLYIAGLIHPYL
KYAFDVLIIYTCLATKDLGKAAGKVYEALTKGDITEARKRLSYIVSRDTDKLDVENISRGAIETVAENISDGIIAPMFYA
FIGGAPLAIFYKAASTLDSMVGYRNEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRFKHQ
SPNSAHGEAAVAGALNIQLGGLNYYFGKPEIKPTLGDGKEKIIPQHIKYSIKIMYMTSFLGLVVFYGMKILVP

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 34670; Mature: 34670

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVVLAYLLDLLIGDPEGYPHPVRIIGRVVSHLESILRRYAKSNRALKIAGFILCGLTVT
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAFAATYALLYIAGLIHPYLKYAFDVLIIYTCLATKDLGKAAGKVYEALTKGDITEARKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSYIVSRDTDKLDVENISRGAIETVAENISDGIIAPMFYAFIGGAPLAIFYKAASTLDSM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGYRNEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRFKHQ
HCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHEEHHHCCC
SPNSAHGEAAVAGALNIQLGGLNYYFGKPEIKPTLGDGKEKIIPQHIKYSIKIMYMTSFL
CCCCCCCCHHEEEEEEEEECCEEEECCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHH
GLVVFYGMKILVP
HHHHHHHHHHCCC
>Mature Secondary Structure
MEVVLAYLLDLLIGDPEGYPHPVRIIGRVVSHLESILRRYAKSNRALKIAGFILCGLTVT
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAFAATYALLYIAGLIHPYLKYAFDVLIIYTCLATKDLGKAAGKVYEALTKGDITEARKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSYIVSRDTDKLDVENISRGAIETVAENISDGIIAPMFYAFIGGAPLAIFYKAASTLDSM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGYRNEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRFKHQ
HCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHEEHHHCCC
SPNSAHGEAAVAGALNIQLGGLNYYFGKPEIKPTLGDGKEKIIPQHIKYSIKIMYMTSFL
CCCCCCCCHHEEEEEEEEECCEEEECCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHH
GLVVFYGMKILVP
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]