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The map label for this gene is hofB [C]

Identifier: 162418353

GI number: 162418353

Start: 270437

End: 271723

Strand: Direct

Name: hofB [C]

Synonym: YpAngola_A0260

Alternate gene names: 162418353

Gene position: 270437-271723 (Clockwise)

Preceding gene: 162419965

Following gene: 162418856

Centisome position: 6.0

GC content: 42.58

Gene sequence:

>1287_bases
ATGATTGTCCCTTTAAAAATACAAGAGTTAATGCGCGAAAGAATGTTAGCCAATATTGACATTAATAAAGTTGAACTCCT
GGTTGGTGATCGTAACAAACTCATCGGATTGCTCTCTCAAACATTCGATGATTTATTTAATAACAATGAATATAACTTAA
CGACTCAAGCACAAAAATATATTATTGAAATGATAGCTGATGAAATAACCGGCTTTGGCCCATTAAGAGAACTTATGGAG
GATGATTCCATTAGTGATATTATGGTCAACGGCCCAGAAAGGATATTCATCGAAAGATATGGCCTGTTAAAATTAACTGA
CCGGCGGTTTGTTAATAATACTCAACTCACCGATATCGCAAAGCGTTTAATGCAAAAGGTTAATCGACGCATTGATGAAG
GCCGCCCATTAGCAGATGCCCGTTTAATCGATGGTAGCCGAATAAACGTCGCGATCAGCCCCATTGCTTTAGATGGTACC
GCCCTTTCTATCCGTAAATTCAGTAAAAATAAACGGAGATTAGAAGATTTGGTCGATATGGGAGCCATGAGTAGTGATAT
GGCAAATTTCCTAATTATTGCTGCCAGTTGCCGCGTAAATATTATTATTTCCGGAGGTACAGGCTCAGGGAAAACCACGC
TATTGAATGCGCTTTCAAAATATATTTCAGAAGATGAGCGGGTGATAACACTCGAAGATGCTGCGGAACTGAATCTGGAG
CAGCCCCATGTGGTCAGGATGGAAACCCGTCTGGCGGGGCTGGAGAATACCGGCCAGATAACCATGCGCGATCTGGTGAT
TAACTCCCTGCGTATGCGCCCTGACAGGATCATTATTGGTGAGTGCCGGGGTGAGGAAACCTTTGAAATGTTACAGGCGA
TGAACACTGGCCATAACGGTTCAATGTCCACCCTACATGCCAATACTCCCCGTGATGCTGTTGCCCGTTTAGAAAGCATG
ATTATGATGGGGCCGGTTAATATGCCTCTCATTACCATCCGCCGTAATATTGCATCTGCAATTAATCTTATTGTCCAAGT
CTCACGTATGAATGATGGCTCGCGAAAAATTCGCAATATCAGCGAGATCATGGGAATGGAAGGTGAACATGTTGTTTTGC
AAGATATATTTACTTTCCAACCCGCCAGTACTCGTGATGATCAAGGGCGTATTCAGGGTGAGTTTATCAACCATGGGCTA
TTTAATCGGTCATCAGTCAGAATAAACGCCGATATCCACAATCTGGCCAATGAGTTAAACAGTGTTTTCTCTACGGTGAG
CAAATGA

Upstream 100 bases:

>100_bases
TGGCAAAACAATCTTTAGGTATAAATATAAATTTATCCTCTCATACCAATATGTGGATTAGGGAAAAACTCAATAAGTTA
TTTAAATAAATGAGGTTATT

Downstream 100 bases:

>100_bases
TTTATTACGTCGTCGCGTTATCCGGTATTTTATTACTGGTGCTGAATAACCTTAAGTGGATGAAAATAAAGCGCTCAATA
AGCAACACTAAAAAGAGCAA

Product: type II/IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MIVPLKIQELMRERMLANIDINKVELLVGDRNKLIGLLSQTFDDLFNNNEYNLTTQAQKYIIEMIADEITGFGPLRELME
DDSISDIMVNGPERIFIERYGLLKLTDRRFVNNTQLTDIAKRLMQKVNRRIDEGRPLADARLIDGSRINVAISPIALDGT
ALSIRKFSKNKRRLEDLVDMGAMSSDMANFLIIAASCRVNIIISGGTGSGKTTLLNALSKYISEDERVITLEDAAELNLE
QPHVVRMETRLAGLENTGQITMRDLVINSLRMRPDRIIIGECRGEETFEMLQAMNTGHNGSMSTLHANTPRDAVARLESM
IMMGPVNMPLITIRRNIASAINLIVQVSRMNDGSRKIRNISEIMGMEGEHVVLQDIFTFQPASTRDDQGRIQGEFINHGL
FNRSSVRINADIHNLANELNSVFSTVSK

Sequences:

>Translated_428_residues
MIVPLKIQELMRERMLANIDINKVELLVGDRNKLIGLLSQTFDDLFNNNEYNLTTQAQKYIIEMIADEITGFGPLRELME
DDSISDIMVNGPERIFIERYGLLKLTDRRFVNNTQLTDIAKRLMQKVNRRIDEGRPLADARLIDGSRINVAISPIALDGT
ALSIRKFSKNKRRLEDLVDMGAMSSDMANFLIIAASCRVNIIISGGTGSGKTTLLNALSKYISEDERVITLEDAAELNLE
QPHVVRMETRLAGLENTGQITMRDLVINSLRMRPDRIIIGECRGEETFEMLQAMNTGHNGSMSTLHANTPRDAVARLESM
IMMGPVNMPLITIRRNIASAINLIVQVSRMNDGSRKIRNISEIMGMEGEHVVLQDIFTFQPASTRDDQGRIQGEFINHGL
FNRSSVRINADIHNLANELNSVFSTVSK
>Mature_428_residues
MIVPLKIQELMRERMLANIDINKVELLVGDRNKLIGLLSQTFDDLFNNNEYNLTTQAQKYIIEMIADEITGFGPLRELME
DDSISDIMVNGPERIFIERYGLLKLTDRRFVNNTQLTDIAKRLMQKVNRRIDEGRPLADARLIDGSRINVAISPIALDGT
ALSIRKFSKNKRRLEDLVDMGAMSSDMANFLIIAASCRVNIIISGGTGSGKTTLLNALSKYISEDERVITLEDAAELNLE
QPHVVRMETRLAGLENTGQITMRDLVINSLRMRPDRIIIGECRGEETFEMLQAMNTGHNGSMSTLHANTPRDAVARLESM
IMMGPVNMPLITIRRNIASAINLIVQVSRMNDGSRKIRNISEIMGMEGEHVVLQDIFTFQPASTRDDQGRIQGEFINHGL
FNRSSVRINADIHNLANELNSVFSTVSK

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=267, Percent_Identity=25.8426966292135, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48088; Mature: 48088

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPLKIQELMRERMLANIDINKVELLVGDRNKLIGLLSQTFDDLFNNNEYNLTTQAQKY
CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
IIEMIADEITGFGPLRELMEDDSISDIMVNGPERIFIERYGLLKLTDRRFVNNTQLTDIA
HHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCEEEEEECCCEEEECCHHCCCCHHHHHH
KRLMQKVNRRIDEGRPLADARLIDGSRINVAISPIALDGTALSIRKFSKNKRRLEDLVDM
HHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
GAMSSDMANFLIIAASCRVNIIISGGTGSGKTTLLNALSKYISEDERVITLEDAAELNLE
CCCHHHHHCEEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
QPHVVRMETRLAGLENTGQITMRDLVINSLRMRPDRIIIGECRGEETFEMLQAMNTGHNG
CCCEEEEHHHHCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCC
SMSTLHANTPRDAVARLESMIMMGPVNMPLITIRRNIASAINLIVQVSRMNDGSRKIRNI
CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SEIMGMEGEHVVLQDIFTFQPASTRDDQGRIQGEFINHGLFNRSSVRINADIHNLANELN
HHHHCCCCCEEEEEHHHHCCCCCCCCCCCCEEHHHHHCCCCCCCCEEEECHHHHHHHHHH
SVFSTVSK
HHHHHHCC
>Mature Secondary Structure
MIVPLKIQELMRERMLANIDINKVELLVGDRNKLIGLLSQTFDDLFNNNEYNLTTQAQKY
CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
IIEMIADEITGFGPLRELMEDDSISDIMVNGPERIFIERYGLLKLTDRRFVNNTQLTDIA
HHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCEEEEEECCCEEEECCHHCCCCHHHHHH
KRLMQKVNRRIDEGRPLADARLIDGSRINVAISPIALDGTALSIRKFSKNKRRLEDLVDM
HHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
GAMSSDMANFLIIAASCRVNIIISGGTGSGKTTLLNALSKYISEDERVITLEDAAELNLE
CCCHHHHHCEEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
QPHVVRMETRLAGLENTGQITMRDLVINSLRMRPDRIIIGECRGEETFEMLQAMNTGHNG
CCCEEEEHHHHCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCC
SMSTLHANTPRDAVARLESMIMMGPVNMPLITIRRNIASAINLIVQVSRMNDGSRKIRNI
CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SEIMGMEGEHVVLQDIFTFQPASTRDDQGRIQGEFINHGLFNRSSVRINADIHNLANELN
HHHHCCCCCEEEEEHHHHCCCCCCCCCCCCEEHHHHHCCCCCCCCEEEECHHHHHHHHHH
SVFSTVSK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]