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The map label for this gene is ttgF [H]

Identifier: 162149602

GI number: 162149602

Start: 3921671

End: 3923155

Strand: Direct

Name: ttgF [H]

Synonym: GDI_3841

Alternate gene names: 162149602

Gene position: 3921671-3923155 (Clockwise)

Preceding gene: 162149601

Following gene: 162149606

Centisome position: 99.43

GC content: 76.63

Gene sequence:

>1485_bases
TTGATGCGTCGGGCGGTCCGGGCGGGGTGGGTCGCGGGCCTCGCCTGGGTCTGGTTGGGGGGCTGCACGGTCGGGCCGGC
CTTCCACGCGCCGCGCGCCGATATGCCGGCGGCGTGGCATGACGTGTCGGCGCATGGCGGGGGTGTCGCGCTGGTGGCGC
GGCCCGATCCGCTCTGGTGGCGGATGTTCCGCGACCCGGTGCTGGACGCGCTGGTGGCGCGGGCGATGGCGGGCAATCCG
GGCTTTGAGGAAAATGCGGCGCGCGTCGTCCAGGCGCGGGAGCAGGAGGCCACCCAGCGTGCCGCCGGCCTGCCGGAACT
GGGGGCCTCGGCGCGCTATACGCGCGAACGGCTGGGCGAGGCGGGATTGTTCTCGGTGCTGGGGGGGGCGGGCAGCGGCA
CGGGGCAGCCGGCGTTCCTGGGCGGGATCGGCGGCCTGACGCAGGGGACGGACCTGTATCAGGTCGGGTTCGACGCATCG
TGGGAACTGGACCTGTTCGGCCGGGTGCGGCGGTCGGTGGAACAGGCACACGCGCAGGTGGCGGCGCAGGTCGCCCGGCA
GGGCGATGCGCGGCTGACGCTGCAGGGCGACGTGGTGCGGGCCTATCTGCAATGGCGGGCGGCGCAGGCGCTGCTGGACC
TGGCGGGCGAGGTGGCGGCGGCGCGGGCGCGGGCGGTGGCGCTGCGGGCGTTCCAGCGCCGGCTGGGGCTGGCGGACGGC
ACGGATGTCGACCTGGCCCGCGCGGCGCTGGTGCGGGCGCAGGGGCAGGCGGCCGGATTCCAGCGGCAGGCGGGGCAGGC
GCTGAACCGGCTGGCCATCCTGACCGGGCAGCCGCCGGGGGCACTGGACGGCCCGCTTGCCGCGGTCCGTCCGCTGCCGG
ACCCGCCGCCGCGCGTGCCGGTGGTGCTGTCGGCGGCGCTGGCACGGCTGCGGCCGGACATCCGCGCGGCCGAGGCCGAC
CTGCATGCCGCCACCGCCGGGATCGGCGCGGCGGTGGCGCAGCTTTATCCCGACATCACGCTGTCCGGGCAGGTCGGCCA
GCGCACGCTGACGCTGGGCAGCCTGGCGGACTGGGGCAACACGTTCTACCAGTTCGGCCCCGCGATTTCGCTGCCGCTGT
TCCAGGGCGGGCGGCTGCGGGCCGCGATCCGGCTGGCCCGTGCCCGGCAGCAGGAGGCCGCCCTGGCCTATCGCCAGCGC
GTGCTGGATGCGCTGGGCGAGGTGGAGGATGCGCTGGTCGCGCTGCGCACGGACGGCGCGGCGCGCGAGAGCGACCGCGC
GGCGATGGCCAGCGTCACCGACCGGCTGGCCCTGGCCCGAACCCGCTATCGCGACGGGACCGGCGATGCGCTGGCGGTGC
TGGATGCGCGGGCCGAGCTGGGTGGCGCGGGGCAGGACGACATCCAGGCGCGGCTGGCGGTGCTGCTGGATGTGGTGGCG
CTGTGCAAGGCGACGGGCGGCGGCTGGCCGGAGGCCGGGGACTAG

Upstream 100 bases:

>100_bases
GAAACGGGCTGGCGGAGATCCTGCCCGACCTGTGGCCGATCGTGCTGTTCACGCTCTGCACGGTCGCGGTCGCCGTGCGC
TTCTATCGGGAAACGCTGGA

Downstream 100 bases:

>100_bases
AATCCTCCCGTCACGCCGTGCCTTCGTCGGCCGGTTCGGCATCATGTTCGGCCAGGCGGACGGTGTTGCGGCCCGCCCGC
TTGGCGGCGTACAGCGCGAC

Product: outer membrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MMRRAVRAGWVAGLAWVWLGGCTVGPAFHAPRADMPAAWHDVSAHGGGVALVARPDPLWWRMFRDPVLDALVARAMAGNP
GFEENAARVVQAREQEATQRAAGLPELGASARYTRERLGEAGLFSVLGGAGSGTGQPAFLGGIGGLTQGTDLYQVGFDAS
WELDLFGRVRRSVEQAHAQVAAQVARQGDARLTLQGDVVRAYLQWRAAQALLDLAGEVAAARARAVALRAFQRRLGLADG
TDVDLARAALVRAQGQAAGFQRQAGQALNRLAILTGQPPGALDGPLAAVRPLPDPPPRVPVVLSAALARLRPDIRAAEAD
LHAATAGIGAAVAQLYPDITLSGQVGQRTLTLGSLADWGNTFYQFGPAISLPLFQGGRLRAAIRLARARQQEAALAYRQR
VLDALGEVEDALVALRTDGAARESDRAAMASVTDRLALARTRYRDGTGDALAVLDARAELGGAGQDDIQARLAVLLDVVA
LCKATGGGWPEAGD

Sequences:

>Translated_494_residues
MMRRAVRAGWVAGLAWVWLGGCTVGPAFHAPRADMPAAWHDVSAHGGGVALVARPDPLWWRMFRDPVLDALVARAMAGNP
GFEENAARVVQAREQEATQRAAGLPELGASARYTRERLGEAGLFSVLGGAGSGTGQPAFLGGIGGLTQGTDLYQVGFDAS
WELDLFGRVRRSVEQAHAQVAAQVARQGDARLTLQGDVVRAYLQWRAAQALLDLAGEVAAARARAVALRAFQRRLGLADG
TDVDLARAALVRAQGQAAGFQRQAGQALNRLAILTGQPPGALDGPLAAVRPLPDPPPRVPVVLSAALARLRPDIRAAEAD
LHAATAGIGAAVAQLYPDITLSGQVGQRTLTLGSLADWGNTFYQFGPAISLPLFQGGRLRAAIRLARARQQEAALAYRQR
VLDALGEVEDALVALRTDGAARESDRAAMASVTDRLALARTRYRDGTGDALAVLDARAELGGAGQDDIQARLAVLLDVVA
LCKATGGGWPEAGD
>Mature_494_residues
MMRRAVRAGWVAGLAWVWLGGCTVGPAFHAPRADMPAAWHDVSAHGGGVALVARPDPLWWRMFRDPVLDALVARAMAGNP
GFEENAARVVQAREQEATQRAAGLPELGASARYTRERLGEAGLFSVLGGAGSGTGQPAFLGGIGGLTQGTDLYQVGFDAS
WELDLFGRVRRSVEQAHAQVAAQVARQGDARLTLQGDVVRAYLQWRAAQALLDLAGEVAAARARAVALRAFQRRLGLADG
TDVDLARAALVRAQGQAAGFQRQAGQALNRLAILTGQPPGALDGPLAAVRPLPDPPPRVPVVLSAALARLRPDIRAAEAD
LHAATAGIGAAVAQLYPDITLSGQVGQRTLTLGSLADWGNTFYQFGPAISLPLFQGGRLRAAIRLARARQQEAALAYRQR
VLDALGEVEDALVALRTDGAARESDRAAMASVTDRLALARTRYRDGTGDALAVLDARAELGGAGQDDIQARLAVLLDVVA
LCKATGGGWPEAGD

Specific function: Probable outer membrane component of the sepABC efflux pump with unknown specificity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=471, Percent_Identity=28.2377919320594, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI2367348, Length=443, Percent_Identity=27.313769751693, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51818; Mature: 51818

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRAVRAGWVAGLAWVWLGGCTVGPAFHAPRADMPAAWHDVSAHGGGVALVARPDPLWW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
RMFRDPVLDALVARAMAGNPGFEENAARVVQAREQEATQRAAGLPELGASARYTRERLGE
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
AGLFSVLGGAGSGTGQPAFLGGIGGLTQGTDLYQVGFDASWELDLFGRVRRSVEQAHAQV
CHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AAQVARQGDARLTLQGDVVRAYLQWRAAQALLDLAGEVAAARARAVALRAFQRRLGLADG
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TDVDLARAALVRAQGQAAGFQRQAGQALNRLAILTGQPPGALDGPLAAVRPLPDPPPRVP
CCHHHHHHHHHHHCCHHCCHHHHHHHHHHHEEEEECCCCCCCCCCHHHCCCCCCCCCCCH
VVLSAALARLRPDIRAAEADLHAATAGIGAAVAQLYPDITLSGQVGQRTLTLGSLADWGN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEHHHHHHHHH
TFYQFGPAISLPLFQGGRLRAAIRLARARQQEAALAYRQRVLDALGEVEDALVALRTDGA
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
ARESDRAAMASVTDRLALARTRYRDGTGDALAVLDARAELGGAGQDDIQARLAVLLDVVA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH
LCKATGGGWPEAGD
HHHHCCCCCCCCCC
>Mature Secondary Structure
MMRRAVRAGWVAGLAWVWLGGCTVGPAFHAPRADMPAAWHDVSAHGGGVALVARPDPLWW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
RMFRDPVLDALVARAMAGNPGFEENAARVVQAREQEATQRAAGLPELGASARYTRERLGE
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
AGLFSVLGGAGSGTGQPAFLGGIGGLTQGTDLYQVGFDASWELDLFGRVRRSVEQAHAQV
CHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AAQVARQGDARLTLQGDVVRAYLQWRAAQALLDLAGEVAAARARAVALRAFQRRLGLADG
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TDVDLARAALVRAQGQAAGFQRQAGQALNRLAILTGQPPGALDGPLAAVRPLPDPPPRVP
CCHHHHHHHHHHHCCHHCCHHHHHHHHHHHEEEEECCCCCCCCCCHHHCCCCCCCCCCCH
VVLSAALARLRPDIRAAEADLHAATAGIGAAVAQLYPDITLSGQVGQRTLTLGSLADWGN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEHHHHHHHHH
TFYQFGPAISLPLFQGGRLRAAIRLARARQQEAALAYRQRVLDALGEVEDALVALRTDGA
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
ARESDRAAMASVTDRLALARTRYRDGTGDALAVLDARAELGGAGQDDIQARLAVLLDVVA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH
LCKATGGGWPEAGD
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9037074 [H]