| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is ybhF [H]
Identifier: 162149601
GI number: 162149601
Start: 3921066
End: 3921674
Strand: Direct
Name: ybhF [H]
Synonym: GDI_3840
Alternate gene names: 162149601
Gene position: 3921066-3921674 (Clockwise)
Preceding gene: 162149600
Following gene: 162149602
Centisome position: 99.41
GC content: 68.31
Gene sequence:
>609_bases ATGAACGGCGCGATGAACGGACCGAAACCCGAAGAGACTGGGGAGTACGTCATCGACGTGCGGGACCTGCGCAAGGATTT CGGGACGCAGCGCTTCAGCCTGTATGAGGACCTGACGGTGCGCGAGAACCTGGAACTCGTCGCCGGGATCTATGAACTGT CGGACCCGCGCGGTGCGGTCGATGCCATGCTGGACCGCATGGAACTGCGCGGCCGGTCCGGCCAGTTGGCCGGCCAGCTG TCGGGCGGATGGAAGCAGCGGCTGGCGCTGACGGCCTGCGTGCTGCACCGGCCGGCGCTGCTGCTGCTGGACGAGCCGAC GGCGGGGGTGGATGCGCGGGCGCGGCGCGCGTTCTGGGACCTGATCCACGACATGGCCGGCGGCGGCCTGACGGTGCTGG TCTCCACCCATTACATGGACGAGGCCGAGCGCTGCGCCCGCGTGATCGGCGAGGTGATGCCGACGACGCATGCCATGCGC ATCGTGCGCGGGGTGCTGCTGAAGGGAAACGGGCTGGCGGAGATCCTGCCCGACCTGTGGCCGATCGTGCTGTTCACGCT CTGCACGGTCGCGGTCGCCGTGCGCTTCTATCGGGAAACGCTGGATTGA
Upstream 100 bases:
>100_bases AGCTGGTCTACCTGGTCCAGGCGCGACCGCGTGCCGACCAGGCGGGGATGCTGAATCCCGGCCAGCCGGTGACGGTCAGC CCGGCATGGGCGCCCGCGCG
Downstream 100 bases:
>100_bases TGCGTCGGGCGGTCCGGGCGGGGTGGGTCGCGGGCCTCGCCTGGGTCTGGTTGGGGGGCTGCACGGTCGGGCCGGCCTTC CACGCGCCGCGCGCCGATAT
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MNGAMNGPKPEETGEYVIDVRDLRKDFGTQRFSLYEDLTVRENLELVAGIYELSDPRGAVDAMLDRMELRGRSGQLAGQL SGGWKQRLALTACVLHRPALLLLDEPTAGVDARARRAFWDLIHDMAGGGLTVLVSTHYMDEAERCARVIGEVMPTTHAMR IVRGVLLKGNGLAEILPDLWPIVLFTLCTVAVAVRFYRETLD
Sequences:
>Translated_202_residues MNGAMNGPKPEETGEYVIDVRDLRKDFGTQRFSLYEDLTVRENLELVAGIYELSDPRGAVDAMLDRMELRGRSGQLAGQL SGGWKQRLALTACVLHRPALLLLDEPTAGVDARARRAFWDLIHDMAGGGLTVLVSTHYMDEAERCARVIGEVMPTTHAMR IVRGVLLKGNGLAEILPDLWPIVLFTLCTVAVAVRFYRETLD >Mature_202_residues MNGAMNGPKPEETGEYVIDVRDLRKDFGTQRFSLYEDLTVRENLELVAGIYELSDPRGAVDAMLDRMELRGRSGQLAGQL SGGWKQRLALTACVLHRPALLLLDEPTAGVDARARRAFWDLIHDMAGGGLTVLVSTHYMDEAERCARVIGEVMPTTHAMR IVRGVLLKGNGLAEILPDLWPIVLFTLCTVAVAVRFYRETLD
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=150, Percent_Identity=36.6666666666667, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI45446740, Length=150, Percent_Identity=36.6666666666667, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI153792144, Length=131, Percent_Identity=38.9312977099237, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI105990541, Length=150, Percent_Identity=30.6666666666667, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI27262624, Length=111, Percent_Identity=38.7387387387387, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI27262626, Length=111, Percent_Identity=38.7387387387387, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI31657092, Length=152, Percent_Identity=30.2631578947368, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI116734710, Length=129, Percent_Identity=34.8837209302326, Blast_Score=71, Evalue=6e-13, Organism=Homo sapiens, GI21536376, Length=155, Percent_Identity=30.9677419354839, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI150417984, Length=129, Percent_Identity=34.8837209302326, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=129, Percent_Identity=34.8837209302326, Blast_Score=68, Evalue=4e-12, Organism=Homo sapiens, GI6005701, Length=123, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-12, Organism=Homo sapiens, GI27477115, Length=123, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI27881501, Length=131, Percent_Identity=32.0610687022901, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI30795238, Length=131, Percent_Identity=32.0610687022901, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=151, Percent_Identity=39.7350993377483, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI48994943, Length=138, Percent_Identity=42.0289855072464, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1786319, Length=136, Percent_Identity=36.0294117647059, Blast_Score=90, Evalue=8e-20, Organism=Escherichia coli, GI1786872, Length=161, Percent_Identity=31.055900621118, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787089, Length=136, Percent_Identity=33.0882352941176, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1789672, Length=145, Percent_Identity=31.0344827586207, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787029, Length=135, Percent_Identity=30.3703703703704, Blast_Score=65, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=75, Percent_Identity=48, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1786703, Length=126, Percent_Identity=34.9206349206349, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787105, Length=148, Percent_Identity=29.7297297297297, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533608, Length=129, Percent_Identity=38.7596899224806, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17510237, Length=141, Percent_Identity=28.3687943262411, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565586, Length=143, Percent_Identity=34.2657342657343, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983523, Length=113, Percent_Identity=38.0530973451327, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983516, Length=113, Percent_Identity=38.0530973451327, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983510, Length=113, Percent_Identity=38.0530973451327, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193202878, Length=90, Percent_Identity=37.7777777777778, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582014, Length=146, Percent_Identity=35.6164383561644, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24582012, Length=146, Percent_Identity=35.6164383561644, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI85725262, Length=158, Percent_Identity=35.4430379746835, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28574150, Length=151, Percent_Identity=32.4503311258278, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI116007328, Length=151, Percent_Identity=32.4503311258278, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24650853, Length=156, Percent_Identity=31.4102564102564, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24650855, Length=156, Percent_Identity=31.4102564102564, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221512771, Length=143, Percent_Identity=30.0699300699301, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI281362751, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007184, Length=117, Percent_Identity=35.042735042735, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI221500365, Length=117, Percent_Identity=35.042735042735, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI24643674, Length=153, Percent_Identity=28.7581699346405, Blast_Score=70, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 22410; Mature: 22410
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGAMNGPKPEETGEYVIDVRDLRKDFGTQRFSLYEDLTVRENLELVAGIYELSDPRGAV CCCCCCCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH DAMLDRMELRGRSGQLAGQLSGGWKQRLALTACVLHRPALLLLDEPTAGVDARARRAFWD HHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH LIHDMAGGGLTVLVSTHYMDEAERCARVIGEVMPTTHAMRIVRGVLLKGNGLAEILPDLW HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH PIVLFTLCTVAVAVRFYRETLD HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNGAMNGPKPEETGEYVIDVRDLRKDFGTQRFSLYEDLTVRENLELVAGIYELSDPRGAV CCCCCCCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH DAMLDRMELRGRSGQLAGQLSGGWKQRLALTACVLHRPALLLLDEPTAGVDARARRAFWD HHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH LIHDMAGGGLTVLVSTHYMDEAERCARVIGEVMPTTHAMRIVRGVLLKGNGLAEILPDLW HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH PIVLFTLCTVAVAVRFYRETLD HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]