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The map label for this gene is yhjC [H]

Identifier: 162148926

GI number: 162148926

Start: 3246045

End: 3246929

Strand: Direct

Name: yhjC [H]

Synonym: GDI_3156

Alternate gene names: 162148926

Gene position: 3246045-3246929 (Clockwise)

Preceding gene: 162148925

Following gene: 162148927

Centisome position: 82.3

GC content: 65.08

Gene sequence:

>885_bases
TTGGACTGGGATAAACTCCGTATTTTCCATGCGGTGGCCGAAGCAGGGTCCTTCACACACGCGGGTGACGTACTCAATCT
TAGCCAGTCGGCGGTCTCCCGCCAGATTTCGGCGCTGGAAGAAGCGCTGCAGGTTCCCCTGTTCCACCGACACGCGCGCG
GACTGATCCTGACGGAACAGGGCGAAACCCTGAACCAGACGGTGCGCGAGGTCTTTTCCAAGCTGGCGATGACCCAGTCC
CTGCTGACCGAAAGCAAGGAAAAGGCCGCCGGACGGCTGCGCGTGACCACGACGACCGGTTTCGGAACCTGCTGGCTGAC
GCCGCGCCTGCATCGTTTCGTGGACGCCAATCCGGACATCAGCATCACCCTGATCCTGGAAGACAACGACCTGGATCTGG
GCATGCGCGAGGCCGATGTCGCGGTGCGGATGCACCCGCCGCGCCAGCCCGACCTGGTCCAGCGCCACCTGGCGGACTTC
CCGCTGCCGATCTACGCCTCGCCCGGCTATCTGGAGGAATTCGGCACCCCGGCGACGCTGGACGACCTGTCCAGCCACAA
GCTGGTGCTGTTCGGCGGCTATCATCCGCCGGTGCCGCACATCAACTGGCTGGCCGAAGCCGGCGTGCCGGCGGACGAGA
AGCGCCCCGCGCGGATCGAGGTCAACAGCCTGCCGGCCATGGCCGAGGCCATCGCCTCCGGCGTCGGAATCGGGTCGATC
CCGGCCTATGCGGCGGTCCTGCACCCGCATCTGGTCAAGATCCTGTCGGACGTCACGGTCCCGACGGTCGATGCCTATTT
CGTCTATCCCGAGGAACTGCGCACATCGAAGCGCGTCGCGGTCTTCCGCGATTTCCTGCTGGCCGAAATCAACGGCCGTC
ACTGA

Upstream 100 bases:

>100_bases
TGTCGCACTGAATACCATAAATCCTTGACCGGATCGGGTATTTCCGTCACCAGAACCAGATTGTAACGACAGGTTCTCCA
GCCAGGATCGGAATGCAGCG

Downstream 100 bases:

>100_bases
CAGGTCCGCATCCAGCCAGGCAGCATTCGAATGCAACAGGAAAAACGGACAATGGCCGGCGGCGGCACAGGCACACAGGG
CAACGGAACAGCCAAGCAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQS
LLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDISITLILEDNDLDLGMREADVAVRMHPPRQPDLVQRHLADF
PLPIYASPGYLEEFGTPATLDDLSSHKLVLFGGYHPPVPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIGSI
PAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAEINGRH

Sequences:

>Translated_294_residues
MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQS
LLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDISITLILEDNDLDLGMREADVAVRMHPPRQPDLVQRHLADF
PLPIYASPGYLEEFGTPATLDDLSSHKLVLFGGYHPPVPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIGSI
PAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAEINGRH
>Mature_294_residues
MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQS
LLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDISITLILEDNDLDLGMREADVAVRMHPPRQPDLVQRHLADF
PLPIYASPGYLEEFGTPATLDDLSSHKLVLFGGYHPPVPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIGSI
PAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAEINGRH

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.3754266211604, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=30.4498269896194, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789173, Length=289, Percent_Identity=30.1038062283737, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787128, Length=241, Percent_Identity=27.8008298755187, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=26.2237762237762, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789639, Length=237, Percent_Identity=26.5822784810127, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=24.7386759581882, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI157672245, Length=250, Percent_Identity=30, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=27.4914089347079, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=24.2320819112628, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788706, Length=185, Percent_Identity=28.1081081081081, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790011, Length=230, Percent_Identity=24.7826086956522, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=207, Percent_Identity=24.6376811594203, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=254, Percent_Identity=25.9842519685039, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32430; Mature: 32430

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECC
GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEECHHHHHHHCCCCCE
SITLILEDNDLDLGMREADVAVRMHPPRQPDLVQRHLADFPLPIYASPGYLEEFGTPATL
EEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCH
DDLSSHKLVLFGGYHPPVPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIGSI
HCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCH
PAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAEINGRH
HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECC
GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEECHHHHHHHCCCCCE
SITLILEDNDLDLGMREADVAVRMHPPRQPDLVQRHLADFPLPIYASPGYLEEFGTPATL
EEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCH
DDLSSHKLVLFGGYHPPVPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIGSI
HCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCH
PAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAEINGRH
HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]