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The map label for this gene is secY [H]

Identifier: 161870898

GI number: 161870898

Start: 2040001

End: 2041311

Strand: Reverse

Name: secY [H]

Synonym: NMCC_1988

Alternate gene names: 161870898

Gene position: 2041311-2040001 (Counterclockwise)

Preceding gene: 161871027

Following gene: 161871026

Centisome position: 94.79

GC content: 36.99

Gene sequence:

>1311_bases
GTGGCTAATCAACAAACGTCATCAGGTTCATCCAAATTTGGAGATCTTAAGAAACGTCTTTTGTTTCTATTTGGAGCATT
GATTGTTTTTCGAATTGGTGCCCATATACCCGTACCTGGAGTTGATGCTGTTGCTTTAGCTAAATTATACGAAAGCGCTG
GAAACGGCATCCTGGGAATATTGAATATGTTTTCCGGTGGGTCGTTAGAGCGCTTTAGTATATTTGCAATAGGAATTATG
CCATATATTTCAGCTTCTATTATTGTACAGCTTGCTTCTGAAATTTTGCCATCATTGAAGGCTTTAAAAAAAGAAGGGGA
GGCTGGTAGAAAGGTAATTACGAAATATACTAGGTATGGTACTGTTTTGTTAGCAATTCTTCAAAGTCTAGGTGTTGCAT
CTTTCGTATTTCAGCAAGGAATTGTTGTAACAAGTTCATTTGAGTTTCATGTTTCCACGGTAGTTTCTTTGGTAACGGGA
ACCATGTTTCTTATGTGGCTTGGGGAGCAAATTACTGAAAGGGGTATCGGGAACGGTATTTCTTTAATCATTACGGCAGG
TATTGCTTCAGGTATTCCTTCGGGTATTGCAAAGCTGGTTACACTGACGAACCAAGGTTCTATGAGCATGCTTACGGCGT
TGTTTATTGTATTTGGTGCCTTATTATTAATTTATTTGGTTGTATACTTTGAAAGTGCACAGCGGAAGATTCCTATTCAT
TATGCAAAACGCCAGTTTAATGGTAGGGCGGGTAGTCAAAATACGCATATGCCTTTCAAGTTGAATATGGCTGGTGTTAT
TCCCCCAATTTTTGCTTCCAGTATTATTCTATTTCCATCTACTCTTTTAGGTTGGTTTGGTTCGGCTGATACAAATAGTG
TTTTGCACAAAATAGCTGGATTGTTACAACACGGTCAATTGCTGTATATGGCTTTATTTGCAGCGACAGTTATTTTCTTT
TGTTATTTTTATACGGCTTTGGTTTTTAGCCCTAAAGAAATGGCAGAGAATTTAAAAAAGAGTGGTGCTTTTGTTCCTGG
GATTAGACCTGGTGAGCAGACCTCTAGGTATTTAGAAAAAGTTGTATTACGTTTGACATTGTTTGGAGCTCTTTATATTA
CAACTATTTGTTTAATTCCAGAGTTCTTAACTACGGTTTTAAATGTACCTTTTTATTTGGGTGGCACGTCTTTGTTGATT
CTAGTTGTTGTAACGATGGATTTTAGTACACAAATAAATTCGTATAGGCTTACTCAACAGTATGATAAGTTAATGACTCG
TTCAGAAATGAAATCATTTTCTCGGAAATAG

Upstream 100 bases:

>100_bases
TTTCTAAGGCAGTTGCTTTGAAGGGTATTAAAGTTACCAAAGGTGCGAGAGCTGCTATCGAGGCTGTTGGTGGTAAGATT
GAAATGTAAGGTTTAATATT

Downstream 100 bases:

>100_bases
AATTATGGCGAAAGAAGATACTATCCAAATGCAAGGTGAAATTCTTGAAACTTTACCTAATGCAACATTTAAAGTAAAAC
TTGAGAATGACCATATTGTA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAVALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIM
PYISASIIVQLASEILPSLKALKKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVFGALLLIYLVVYFESAQRKIPIH
YAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSIILFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFF
CYFYTALVFSPKEMAENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFYLGGTSLLI
LVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK

Sequences:

>Translated_436_residues
MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAVALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIM
PYISASIIVQLASEILPSLKALKKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVFGALLLIYLVVYFESAQRKIPIH
YAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSIILFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFF
CYFYTALVFSPKEMAENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFYLGGTSLLI
LVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK
>Mature_435_residues
ANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAVALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMP
YISASIIVQLASEILPSLKALKKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTGT
MFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVFGALLLIYLVVYFESAQRKIPIHY
AKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSIILFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFC
YFYTALVFSPKEMAENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFYLGGTSLLIL
VVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=434, Percent_Identity=56.4516129032258, Blast_Score=462, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47540; Mature: 47409

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAVALAKLYESAGNGILGI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHH
LNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKALKKEGEAGRKVITKYTRYG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTGTMFLMWLGEQITERGIGNGI
HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVFGALLLIYLVVYFESAQRKIPIH
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSIILFPSTLLGWFGSADTNSVLHKIAG
HHHHHHCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLQHGQLLYMALFAATVIFFCYFYTALVFSPKEMAENLKKSGAFVPGIRPGEQTSRYLEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
VVLRLTLFGALYITTICLIPEFLTTVLNVPFYLGGTSLLILVVVTMDFSTQINSYRLTQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
YDKLMTRSEMKSFSRK
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAVALAKLYESAGNGILGI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHH
LNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKALKKEGEAGRKVITKYTRYG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTGTMFLMWLGEQITERGIGNGI
HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVFGALLLIYLVVYFESAQRKIPIH
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSIILFPSTLLGWFGSADTNSVLHKIAG
HHHHHHCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLQHGQLLYMALFAATVIFFCYFYTALVFSPKEMAENLKKSGAFVPGIRPGEQTSRYLEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
VVLRLTLFGALYITTICLIPEFLTTVLNVPFYLGGTSLLILVVVTMDFSTQINSYRLTQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
YDKLMTRSEMKSFSRK
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]