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The map label for this gene is infA

Identifier: 161871026

GI number: 161871026

Start: 2039778

End: 2039996

Strand: Reverse

Name: infA

Synonym: NMCC_1987b

Alternate gene names: 161871026

Gene position: 2039996-2039778 (Counterclockwise)

Preceding gene: 161870898

Following gene: 161871025

Centisome position: 94.73

GC content: 37.9

Gene sequence:

>219_bases
ATGGCGAAAGAAGATACTATCCAAATGCAAGGTGAAATTCTTGAAACTTTACCTAATGCAACATTTAAAGTAAAACTTGA
GAATGACCATATTGTATTGGGTCATATTTCTGGGAAGATGCGGATGCATTACATTCGTATTTCTCCGGGAGATAAGGTCA
CAGTAGAGCTGACACCTTATGATCTAACTAGGGCTCGAATCGTTTTCAGAGCAAGATAA

Upstream 100 bases:

>100_bases
ATGGATTTTAGTACACAAATAAATTCGTATAGGCTTACTCAACAGTATGATAAGTTAATGACTCGTTCAGAAATGAAATC
ATTTTCTCGGAAATAGAATT

Downstream 100 bases:

>100_bases
ACCAATAAAAGGAAAATAAAATGCGTGTACAACCATCTGTTAAGAAAATTTGCCGAAATTGCAAGATTATTCGTCGAAAT
CGTGTAGTTCGTGTAATTTG

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPYDLTRARIVFRAR

Sequences:

>Translated_72_residues
MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPYDLTRARIVFRAR
>Mature_71_residues
AKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPYDLTRARIVFRAR

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=72, Percent_Identity=72.2222222222222, Blast_Score=114, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF1_NEIG1 (Q5F5U8)

Other databases:

- EMBL:   AE004969
- RefSeq:   YP_208851.1
- ProteinModelPortal:   Q5F5U8
- SMR:   Q5F5U8
- STRING:   Q5F5U8
- EnsemblBacteria:   EBNEIT00000002356
- GeneID:   3282427
- GenomeReviews:   AE004969_GR
- KEGG:   ngo:NGO18211
- eggNOG:   COG0361
- GeneTree:   EBGT00050000020208
- HOGENOM:   HBG286099
- OMA:   KMRMHFI
- PhylomeDB:   Q5F5U8
- ProtClustDB:   PRK00276
- BioCyc:   NGON242231:NGO18211-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8295; Mature: 8164

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPY
CCCCCCEEECCHHHHHCCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEEEEEECCC
DLTRARIVFRAR
CCCEEEEEEEEC
>Mature Secondary Structure 
AKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPY
CCCCCEEECCHHHHHCCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEEEEEECCC
DLTRARIVFRAR
CCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA