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The map label for this gene is rnhB [H]

Identifier: 161870870

GI number: 161870870

Start: 2010876

End: 2011460

Strand: Direct

Name: rnhB [H]

Synonym: NMCC_1958

Alternate gene names: 161870870

Gene position: 2010876-2011460 (Clockwise)

Preceding gene: 161870869

Following gene: 161870871

Centisome position: 93.38

GC content: 58.12

Gene sequence:

>585_bases
ATGCACATACTGACCGCCGGCGTGGACGAGGCAGGACGCGGGCCTTTGGTCGGCAGCGTGTTTGCCGCCGCCGTCATCCT
TCCGGAAACATTCGACCTGCCCGGACTGACCGACTCCAAAAAACTCAGCGAGAAAAAACGCGACGCGCTTGCCGAAATGA
TTAAAGAACAGGCGGCCGCGTGGTACGTCGCCGCCGCCACGCCCGAAGAAATCGCAAGCCTCAACATCCTGCACGCCACG
ATGCTCGCCATGAAACGCGCCGTTGACGGTTTGGCTGTGCGTCCTGAAAAAATATTCATCGACGGCAACCGCATTCCCGA
ACATTTGGACATCCCCGCCGAAGCAGTCGTCAAAGGCGACAGCAAAATCATCGAAATCTCCGCCGCATCCGTTTTGGCAA
AGACCGCCCGCGATGCGGAAATGTACGCACTGGCGCAACGCCATCCCCAATACGGTTTCGACAAACACAAAGGTTACGGC
ACGAAGCAGCATCTGGAAGCCCTCAAACAATACGGCGTGCTGCCCGAACACCGCCGAGATTTCGCCCCCGTCAGAAACCT
GCTCGCGCAGCAGACGCTGTTTTAA

Upstream 100 bases:

>100_bases
CATTTGAAGCGCGGGTTTAAAGACGCGAAATAAACACATCGGTACGATGCCGTCTGAAGCCCTTTCAGACGGCATTCCTA
CTATCCCAACAGGAAACATC

Downstream 100 bases:

>100_bases
ACCGGCATAAAAATGCCGTCTGAAGCCTTCAGACGGCATTTTCAGCATCGTAACTTCAAAGAGAAAGAACCCATACCGCC
ATTCCCGCGCAGGCGGTAAT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAAATPEEIASLNILHAT
MLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF

Sequences:

>Translated_194_residues
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAAATPEEIASLNILHAT
MLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF
>Mature_194_residues
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAAATPEEIASLNILHAT
MLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=61.6216216216216, Blast_Score=213, Evalue=5e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 21206; Mature: 21206

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAA
CCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WYVAAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGD
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCCHHHHCCCC
SKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRD
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
FAPVRNLLAQQTLF
HHHHHHHHHHHHCC
>Mature Secondary Structure
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAA
CCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WYVAAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGD
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCCHHHHCCCC
SKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRD
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
FAPVRNLLAQQTLF
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA