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The map label for this gene is omlA [H]

Identifier: 161870856

GI number: 161870856

Start: 1997227

End: 1997646

Strand: Direct

Name: omlA [H]

Synonym: NMCC_1943

Alternate gene names: 161870856

Gene position: 1997227-1997646 (Clockwise)

Preceding gene: 161870854

Following gene: 161870858

Centisome position: 92.75

GC content: 56.43

Gene sequence:

>420_bases
GTGTTACACTACCCATCCCGATTTGCACAGAAAGGCATTTCCGTGAACAAAACCCTCATCCTCGCCCTTTCCGCCCTCCT
CGGCCTTGCCGCGTGCAGCGTCGAACGCGTTTCACTGTTCCCCTCGTACAAACTCAAAATCATACAGGGCAACGAACTCG
AACCTCGCGCCGTCGCCTCCCTCCGCCCCGGTATGACCAAAGACCAAGTCCTGCTCCTGCTCGGCAGCCCCATACTGCGC
GACGCATTCCATACCGACCGCTGGGACTATACCTTCAACACCTCCCGCAACGGCATCATCAAAGACCGAAGCAATCTGAC
CGTCTATTTTGAAAACGGCGTGCTCGTCCGCACCGAAGGCAACGCCCTGCAAAATGCCGCCGAAGCCCTCCGCGTAAAAC
AAAACGCAGACAAACAATAA

Upstream 100 bases:

>100_bases
CAGTTTGCAATAGTAAAACCGCACCGGCGGCCGATGCGCGGACAGGGCGGATACCGCTTAATCGTATGATTATCGTTCGC
TTTTATAAAATATTCAAGCA

Downstream 100 bases:

>100_bases
GGAACACACATGACACCGCTCAAAATCGCCATCGCCGGCGCAAACGGCCGTATGGGGCGCGTCCTCGTCGAAGCCGTCAA
CAACCATCCCGACACCGTCC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MLHYPSRFAQKGISVNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVASLRPGMTKDQVLLLLGSPILR
DAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEGNALQNAAEALRVKQNADKQ

Sequences:

>Translated_139_residues
MLHYPSRFAQKGISVNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVASLRPGMTKDQVLLLLGSPILR
DAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEGNALQNAAEALRVKQNADKQ
>Mature_139_residues
MLHYPSRFAQKGISVNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVASLRPGMTKDQVLLLLGSPILR
DAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEGNALQNAAEALRVKQNADKQ

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 15473; Mature: 15473

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHYPSRFAQKGISVNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVAS
CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCHHEEEECCCEEEEEEECCCCCCHHHHH
LRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEG
CCCCCCHHHEEEEECCHHHHHHHCCCCCCEEEECCCCCEEECCCCEEEEEECCEEEEECC
NALQNAAEALRVKQNADKQ
CHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLHYPSRFAQKGISVNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVAS
CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCHHEEEECCCEEEEEEECCCCCCHHHHH
LRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEG
CCCCCCHHHEEEEECCHHHHHHHCCCCCCEEEECCCCCEEECCCCEEEEEECCEEEEECC
NALQNAAEALRVKQNADKQ
CHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]