| Definition | Neisseria meningitidis 053442, complete genome. |
|---|---|
| Accession | NC_010120 |
| Length | 2,153,416 |
Click here to switch to the map view.
The map label for this gene is gyrB [H]
Identifier: 161870850
GI number: 161870850
Start: 1986147
End: 1988591
Strand: Direct
Name: gyrB [H]
Synonym: NMCC_1933
Alternate gene names: 161870850
Gene position: 1986147-1988591 (Clockwise)
Preceding gene: 161870847
Following gene: 161870851
Centisome position: 92.23
GC content: 55.54
Gene sequence:
>2445_bases GTGCGGACTTGTTTTGGCGGCATCGCAAAATCTTTTCAAAATCCGGCAAAAAATATGACTGAACAAAAACACGAAGAATA CGGCGCCGACAGCATTCAGGTGCTCGAAGGCTTGGAAGCGGTACGCAAACGCCCCGGCATGTACATCGGCGACACGCAGG ACGGCAGCGGTCTGCACCACATGGTGTTCGAAGTATTGGACAACGCCATTGACGAAGCACTCGCCGGACATTGCGACAAA ATCACGGTAACGATACACGCCGACCATTCCGTCAGCGTCGCCGACAACGGGCGCGGTATGCCCACCGGCATCCACCCGAA AGAAGGACGCTCCGCCGCCGAAGTCATCATGACCGTATTGCACGCGGGCGGTAAATTCGACAACAACAGCTACAAAATCT CCGGCGGCCTGCACGGCGTGGGCGTGTCCGTCGTCAACGCGCTGTCCGACTGGGTTACGCTGACCATCTACCGCGACGGC AAAGAACACTTCGTCCGCTTCGTGCGCGGCGAAACCGAAGAGCCGTTGAAAGTGGTCGGCGATTCCGATAAAAAAGGCAC GACCGTGCGCTTCCTCGCCAGTACGGAAACCTTCGGCAACGTCGAATACAGCTTCGACATCCTTGCCAAACGCATCCGCG AACTTTCGTTCCTGAACAACGGCGTGGACATCGAATTGACCGACGAGCGCGACGGCAAACACGAAAGCTTCGCCCTTTCC GGCGGCGTGGCTGGATTCGTGCAATACATGAACCGCAAAAAAACGCCCTTGCACGAAAAAATCTTCTACGCGTTCGGCGA GAAAGACGGCATGAGCGTCGAATGCGCGATGCAGTGGAATGACAGCTACCAAGAAAGCGTGCAGTGTTTTACCAACAACA TTCCGCAACGCGACGGCGGCACCCACTTGACCGCGTTGCGCCAAGTGATGACCCGCACCATCAACAACTATATCGAAGCC AACGAAGTGGCTAAAAAAGCCAAAGTGGAAACCGCCGGCGACGATATGCGTGAAGGTCTGACCTGCGTTTTGTCCGTCAA ACTGCCCGATCCGAAATTCTCATCGCAAACCAAAGACAAACTGGTTTCCGGCGAAATCGGCCCCGTCGTCAACGAAGTCA TCAGCCAAGCCCTGACCGACTTCCTCGAAGAAAACCCTGCCGAAGCCAAAATCATCACCGGCAAAATCGTCGATGCCGCC CGCGCGCGCGAAGCCGCCCGCAAAGCACGCGAAATCACCCGCCGCAAAGGCGTGATGGACGGCTTGGGGCTACCCGGCAA ACTCGCCGACTGCCAAGAAAAAGACCCCGCATTGTCAGAACTTTATCTGGTCGAGGGCGATTCTGCAGGCGGTTCCGCCA TGCAGGGGCGCGACCGCAAATTCCAAGCGATTTTGCCGCTTAAGGGCAAGATTTTGAACGTCGAAAAAGCGCGCTTTGAA AAAATGCTCGCCAGTCAGGAAGTAGCCGCTTTGATTACCGCGTTGGGCGCGGGCATCGGCAAAGAAGAATTCAATGCCGA AAAACTGCGTTACCACCGCATCATCATCATGACCGATGCCGACGTGGACGGCGCGCACATCCGCACCCTGCTCCTGACCT TCTTCTACCGCCAAATGCCCGAGCTGGTCGAACGCGGCTACATCTACATTGCCCAGCCGCCTTTATACAAAGCCAAATAC GGCAAACAAGAACGATATCTCAAAGACGAATTGGAAAAAGACCAATGGCTGCTCGGTCTTGCCTTGGAAAAAGCCAAAAT CATTTCAGACGGCCGCACCATCGAAGGCGCAGAACTTGCCGACACCGCCAAACAATTCCTGTTGGCAAAAACCGTCATCG AACAGGAAAGCCGCTTCGTAGACGAACTCGTCCTGCGCGCCATGCTACACGCGTCGCCCATTGATTTGACGTCGTCTGAA AACGCCGATAAAGCCGTTGCCGAACTTTCCGGTCTGCTTGACGAAAAAGAAGTCGCCCTCGAACGCATCGAAGGTCATGA AGGACACCGGTTCATCAAAATCACGCGCAAGCTGCACGGCAACGTCATGGTCAGCTACATCGAACCCAAGTTCCTCAACA GCAAAGCCTACCAAACCCTCACCCAAACCGCCGCCGCGCTCAAAGGCATGGTCGGCGAGGGTGCCAAGCTTTACAAAGGC GAAAACGGGTACGACGCGGACAGCTTTGAAACCGCTTTGGACATCTTGATGAGCGTTGCCCAAAAAGGTATGTCCATCCA ACGATACAAAGGCTTGGGCGAGATGAACCCCGAGCAGCTGTGGGAAACCACGATGGATCCCGCCGTGCGCCGCCTGTTGA AAGTGCGCATCGAAGATGCCATTGCCGCCGACGAAGTGTTCGTTACGCTGATGGGCGACGAGGTCGAGCCGCGCCGTGCC TTTATCGAAAACAACGCGCTGATTGCCCAAAATATCGACGCATAA
Upstream 100 bases:
>100_bases TTTTCCCGGCGGCACACTGATGCGGATAACGCTGAATTAGGCGGCAAAATCGGCTATAATACACAATTATATATGTCGTC CCGCCCGCTTTTTCTACAAG
Downstream 100 bases:
>100_bases GTGCCGTTTTAAAAAAGGAGACGGGCATCGTGCCGCGTCTCCTTTTGGTTTGTCAAACGGAAGCCATACCGTCTGAAACC GCCTTTCGGAGCAAAACCAT
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MRTCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDK ITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDG KEHFVRFVRGETEEPLKVVGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALS GGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINNYIEA NEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAA RAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFE KMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKY GKQERYLKDELEKDQWLLGLALEKAKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSE NADKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKG ENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRA FIENNALIAQNIDA
Sequences:
>Translated_814_residues MRTCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDK ITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDG KEHFVRFVRGETEEPLKVVGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALS GGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINNYIEA NEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAA RAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFE KMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKY GKQERYLKDELEKDQWLLGLALEKAKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSE NADKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKG ENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRA FIENNALIAQNIDA >Mature_814_residues MRTCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDK ITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDG KEHFVRFVRGETEEPLKVVGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALS GGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINNYIEA NEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAA RAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFE KMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKY GKQERYLKDELEKDQWLLGLALEKAKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSE NADKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKG ENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRA FIENNALIAQNIDA
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=626, Percent_Identity=24.1214057507987, Blast_Score=120, Evalue=6e-27, Organism=Homo sapiens, GI19913406, Length=566, Percent_Identity=24.9116607773852, Blast_Score=110, Evalue=4e-24, Organism=Escherichia coli, GI48994957, Length=799, Percent_Identity=60.0750938673342, Blast_Score=936, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=565, Percent_Identity=40.353982300885, Blast_Score=400, Evalue=1e-112, Organism=Caenorhabditis elegans, GI17535065, Length=579, Percent_Identity=26.0794473229706, Blast_Score=137, Evalue=3e-32, Organism=Caenorhabditis elegans, GI212645845, Length=518, Percent_Identity=24.7104247104247, Blast_Score=123, Evalue=3e-28, Organism=Caenorhabditis elegans, GI212645657, Length=168, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324241, Length=596, Percent_Identity=27.1812080536913, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI17136538, Length=594, Percent_Identity=24.7474747474747, Blast_Score=123, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 90054; Mature: 90054
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHH CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHH MVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL HHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVG HCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCCCCCHHHCC DSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALS CCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC GGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGG CCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCC THLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEECCCCCCCCHHHHH LVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMD HHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC GLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFE CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEECHHHHHHH KMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMP HHHHHHHHHHHHHHHHCCCCCHHCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH ELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGRTIEGAELA HHHHCCEEEEECCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHH DTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAELSGLLDEKEVAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH ERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKG HHHCCCCCCEEEEEEHHHCCCEEEEEECCHHHCHHHHHHHHHHHHHHHHHHCCCCEEECC ENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDA CCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA HHHHHEEEEEECCCCCHHHHHHCCCCEEECCCCC >Mature Secondary Structure MRTCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHH CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHH MVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL HHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVG HCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCCCCCHHHCC DSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALS CCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC GGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGG CCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCC THLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEECCCCCCCCHHHHH LVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMD HHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC GLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFE CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEECHHHHHHH KMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMP HHHHHHHHHHHHHHHHCCCCCHHCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH ELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGRTIEGAELA HHHHCCEEEEECCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHH DTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAELSGLLDEKEVAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH ERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKG HHHCCCCCCEEEEEEHHHCCCEEEEEECCHHHCHHHHHHHHHHHHHHHHHHCCCCEEECC ENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDA CCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA HHHHHEEEEEECCCCCHHHHHHCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1906260 [H]