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The map label for this gene is xseB [H]

Identifier: 161870802

GI number: 161870802

Start: 1933624

End: 1933887

Strand: Direct

Name: xseB [H]

Synonym: NMCC_1884

Alternate gene names: 161870802

Gene position: 1933624-1933887 (Clockwise)

Preceding gene: 161870801

Following gene: 161870803

Centisome position: 89.79

GC content: 51.89

Gene sequence:

>264_bases
ATGTCCAAGTGGCGGGGTTTCAACCGAAAAGGAAACACGATGAAGAAAAACGCCCCGAAATCGTTTGAAGAAGCCTTGTC
GCGCCTTGAATCGCTGACACAAGCTATGCAGGGCGAAATGCCCTTGGAAGACGCGCTTGCCGCCTATCAGGAAGGCAACG
AGCTGGTCAGATACTGCCAAACCAAGCTGGCGCAAGTCGAACAGAAATTACAGGTTTTGGATGCGGACGGGCTGAAGGAG
TTGAACCTTGAATCCGACGAATGA

Upstream 100 bases:

>100_bases
CGCAGGACGACACTTAAAGCACCGCCCTATGTGTCGTCCTGATTTGGAAGGGCTTACACCCCTCCCAAATAAAGTCTGAT
TCTACCGCCCCGAAGGACAG

Downstream 100 bases:

>100_bases
TTTGAAAGCGTGGCAACAGAGGGCGCAGGCACAGACAGAGCTGCTGCTGGAACGCTTTTTGCCGTCTGAAAACGAAATCC
CGCACACGCTGCACGAAGCG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MSKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGLKE
LNLESDE

Sequences:

>Translated_87_residues
MSKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGLKE
LNLESDE
>Mature_86_residues
SKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGLKEL
NLESDE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9893; Mature: 9762

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLEDALAAYQEGNELVRYCQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TKLAQVEQKLQVLDADGLKELNLESDE
HHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLEDALAAYQEGNELVRYCQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TKLAQVEQKLQVLDADGLKELNLESDE
HHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA