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The map label for this gene is ompU

Identifier: 161870757

GI number: 161870757

Start: 1874339

End: 1875772

Strand: Reverse

Name: ompU

Synonym: NMCC_1831

Alternate gene names: NA

Gene position: 1875772-1874339 (Counterclockwise)

Preceding gene: 161870758

Following gene: 161870755

Centisome position: 87.11

GC content: 56.21

Gene sequence:

>1434_bases
ATGCCTGCACGAAACAGATGGATGCTGCTGCTGCCTTTATTGGCAAGCGCGGCATATGCCGAAGAAACACCGCGCGAACC
GGATTTGAGAAGCCGTCCCGAGTTCAGGCTTCATGAAGCGGAGGTCAAACCAATCGACAGGGAGAAGGTGCCGGGGCAGG
TGCGGGAAAAAGGAAAAGTTTTGCAGATTGACGGAGAAACCCTGCTGAAAAATCCCGAATTGTTGTCCCGCGCGATGTAT
TCCGCAGTGGTCTCAAACAATATTGCCGGTATCCGCGTTATTTTGCCGATTTACCTACAACAGGCGCAGCAGGATAAGAT
GTTGGCACTTTATGCACAAGGGATTTTGGCGCAGGCAGACGGTAGGGTGAAGGAGGCGATTTCCCATTACCGGGAATTGA
TTGCCGCCCAACCCGACGCGCCCGCCGTCCGTATGCGTTTGGCGGCAGCATTGTTTGAAAACAGGCAGAACGAGGCGGCG
GCAGACCAGTTCGACCGCCTGAAGGCGGAAAACCTGCCGCCGCAGCTGATGGAGCAGGTCGAGCTGTACCGCAAGGCATT
GCGCGAACGCGATGCGTGGAAGGTAAATGGCGGCTTCAGCGTCACCCGCGAACACAATATCAACCAAGCCCCGAAACGGC
AGCAGTACGGCAAATGGACTTTCCCGAAACAGGTGGACGGCACGGCGGTCAATTACCGGCTCGGCGCGGAGAAAAAATGG
TCGCTGAAAAACGGCTGGTACACGACGGCGGGCGGCGACGTGTCCGGCAGGGTTTATCCGGGGAATAAGAAATTCAACGA
TATGACGGCAGGCGTTTCCGGCGGCATCGGTTTTGCCGACCGGCGCAAAGATGCCGGGCTGGCAGTGTTCCACGAACGCC
GCACCTACGGCAACGACGCTTATTCTTACACCAACGGCGCACGCCTTTATTTCAACCGTTGGCAAACCCCGAAATGGCAA
ACGTTGTCTTCGGCGGAGTGGGGGCGTTTGAAGAATACGCGCCGGGCGCGTTCCGACAATACCCATTTGCAAATTTCCAA
TTCGCTGGTGTTTTACCGGAATGCGCGCCAATATTGGATGGGCGGTTTGGATTTTTACCGCGAGCGCAACCCCGCCGACC
GGGGCGACAATTTCAACCGTTACGGCCTGCGCTTTGCCTGGGGGCAGGAATGGGGCGGCAGCGGCCTGTCTTCGCTGTTG
CGCCTCGGCGCGGCGAAACGGCATTATGAAAAACCCGGCTTTTTCAGCGGTTTTAAAGGGGAAAGGCGCAGGGATAAAGA
ATTGAACACATCCTTGAGCCTTTGGCACCGGGCATTGCATTTCAAAGGCATCACGCCGCGCCTGACGTTGTCGCACCGCG
AAACGCGGAGTAACGATGTGTTCAACGAATACGAGAAAAATCGGGCGTTTGTCGAGTTTAATAAAACGTTCTGA

Upstream 100 bases:

>100_bases
GTCGCGGCATCGGGCGGCAGGGTTTGGAACAGCGGCATAAAAAACTGATACAATCCGCCGATTGATAATGGTTATTTTTT
ATTTTTGTGGGAAGACATTT

Downstream 100 bases:

>100_bases
TTGCTGTTCCTTTTCGGAGGAAACCCTGCCGGCGGCGGTATCACGGCGGGCATCGGCGGCTTTCGGGCGGTGCTTTGCGT
GCCGCCGCGTGTGCGGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MPARNRWMLLLPLLASAAYAEETPREPDLRSRPEFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMY
SAVVSNNIAGIRVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAAALFENRQNEAA
ADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNINQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKW
SLKNGWYTTAGGDVSGRVYPGNKKFNDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQ
TLSSAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRYGLRFAWGQEWGGSGLSSLL
RLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRALHFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF

Sequences:

>Translated_477_residues
MPARNRWMLLLPLLASAAYAEETPREPDLRSRPEFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMY
SAVVSNNIAGIRVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAAALFENRQNEAA
ADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNINQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKW
SLKNGWYTTAGGDVSGRVYPGNKKFNDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQ
TLSSAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRYGLRFAWGQEWGGSGLSSLL
RLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRALHFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF
>Mature_476_residues
PARNRWMLLLPLLASAAYAEETPREPDLRSRPEFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYS
AVVSNNIAGIRVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAAALFENRQNEAAA
DQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNINQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWS
LKNGWYTTAGGDVSGRVYPGNKKFNDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQT
LSSAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRYGLRFAWGQEWGGSGLSSLLR
LGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRALHFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y0313_NEIMB (Q9K165)

Other databases:

- EMBL:   AE002098
- PIR:   G81213
- RefSeq:   NP_273362.1
- EnsemblBacteria:   EBNEIT00000010698
- GeneID:   902429
- GenomeReviews:   AE002098_GR
- KEGG:   nme:NMB0313
- NMPDR:   fig|122586.1.peg.296
- TIGR:   NMB0313
- GeneTree:   EBGT00050000020239
- HOGENOM:   HBG576156
- OMA:   TREHNIN
- ProtClustDB:   CLSK877492
- BioCyc:   NMEN122586:NMB_0313-MONOMER
- GO:   GO:0005488
- InterPro:   IPR007655
- InterPro:   IPR013026
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: PF04575 DUF560

EC number: NA

Molecular weight: Translated: 54887; Mature: 54755

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARNRWMLLLPLLASAAYAEETPREPDLRSRPEFRLHEAEVKPIDREKVPGQVREKGKV
CCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCHHHHCCCE
LQIDGETLLKNPELLSRAMYSAVVSNNIAGIRVILPIYLQQAQQDKMLALYAQGILAQAD
EEECCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GRVKEAISHYRELIAAQPDAPAVRMRLAAALFENRQNEAAADQFDRLKAENLPPQLMEQV
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
ELYRKALRERDAWKVNGGFSVTREHNINQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKW
HHHHHHHHCCCCEEECCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCC
SLKNGWYTTAGGDVSGRVYPGNKKFNDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDA
CCCCCEEEECCCCCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCC
YSYTNGARLYFNRWQTPKWQTLSSAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWM
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEEECCHHHHH
GGLDFYRERNPADRGDNFNRYGLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKG
CCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
ERRRDKELNTSLSLWHRALHFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure 
PARNRWMLLLPLLASAAYAEETPREPDLRSRPEFRLHEAEVKPIDREKVPGQVREKGKV
CCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCHHHHCCCE
LQIDGETLLKNPELLSRAMYSAVVSNNIAGIRVILPIYLQQAQQDKMLALYAQGILAQAD
EEECCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GRVKEAISHYRELIAAQPDAPAVRMRLAAALFENRQNEAAADQFDRLKAENLPPQLMEQV
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
ELYRKALRERDAWKVNGGFSVTREHNINQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKW
HHHHHHHHCCCCEEECCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCC
SLKNGWYTTAGGDVSGRVYPGNKKFNDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDA
CCCCCEEEECCCCCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCC
YSYTNGARLYFNRWQTPKWQTLSSAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWM
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEEECCHHHHH
GGLDFYRERNPADRGDNFNRYGLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKG
CCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
ERRRDKELNTSLSLWHRALHFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10710307