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The map label for this gene is yciO [C]

Identifier: 161870640

GI number: 161870640

Start: 1746437

End: 1747057

Strand: Reverse

Name: yciO [C]

Synonym: NMCC_1710

Alternate gene names: 161870640

Gene position: 1747057-1746437 (Counterclockwise)

Preceding gene: 161870641

Following gene: 161870638

Centisome position: 81.13

GC content: 55.23

Gene sequence:

>621_bases
ATGGCACAGTTTTTCGCTATTCATCCCGACAACCCCCAAGAACGCCTCATCAAGCAGGCGGTCGAAATCGTCAATAAAGG
CGGCGTGGTCGTTTATCCGACCGATTCCTGTTATGCCTTGGGTTGCAAACTCGGCGATAAGGCGGCGATGGAACGCATAC
TCTCCATCCGAAAAATCGATTTGAAACACCACCTGACCCTGATGTGCGCCGATTTGAGCGAGTTGGGCACATACGCCAAA
ATTGACAACGTACAGTTTCGTCAGCTTAAAGCCGCCACACCCGGGCCTTATACTTTTATTTTACAGGCGACGAAGGATGT
GCCGGCGCGCACGCTGCACCCGAAACGCAAAACCATCGGGCTGCGTATTCCCGATAATGCCATTGCACAAGCCCTGCTGG
GGGAATTGGGCGAGCCGCTTTTAAGCTGCACCCTGATGCTGCCCGAAGACGGCGAACCATTGACCGATCCTTATGAAATC
CGCGAGCGTTTGGAACACGCCGTCGATTTGGTGATTGACGGCGGCTGGTGCGGAACCGAGCCGACCACCGTCATCGACAT
GACCGACGGTACGGAATTGGTGCGCCAAGGTTGCGGCGATACGGCGGTGTTCGGTTTGTAG

Upstream 100 bases:

>100_bases
GCCTGCGCGGGAATGACGGGATTTTCTGTTTTTGTGGAAATGACGGGATTTTGAATTTCGGGCGTACAATACGGAAAACA
TGACGATAAGGAAAAAAACT

Downstream 100 bases:

>100_bases
GGAAACCGATGCCGTCTGAAGCATCGGCTGTTCAGACGGCATTGCGCGCCTTGCCGGCGGCAGTCCGAAATGCCGGCGCG
TATCGCGCTCGGTCGGAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAK
IDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
RERLEHAVDLVIDGGWCGTEPTTVIDMTDGTELVRQGCGDTAVFGL

Sequences:

>Translated_206_residues
MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAK
IDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
RERLEHAVDLVIDGGWCGTEPTTVIDMTDGTELVRQGCGDTAVFGL
>Mature_205_residues
AQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKI
DNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIR
ERLEHAVDLVIDGGWCGTEPTTVIDMTDGTELVRQGCGDTAVFGL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=63.9024390243902, Blast_Score=265, Evalue=2e-72,
Organism=Escherichia coli, GI2367210, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22584; Mature: 22453

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID
CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHH
LKHHLTLMCADLSELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG
HHHHHHHEECCHHHCCCEEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHEEE
LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTE
EECCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCC
PTTVIDMTDGTELVRQGCGDTAVFGL
CCEEEEECCCHHHHHCCCCCCEECCC
>Mature Secondary Structure 
AQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID
CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHH
LKHHLTLMCADLSELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG
HHHHHHHEECCHHHCCCEEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHEEE
LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTE
EECCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCC
PTTVIDMTDGTELVRQGCGDTAVFGL
CCEEEEECCCHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]