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The map label for this gene is rbfA [H]

Identifier: 161870244

GI number: 161870244

Start: 1286710

End: 1287081

Strand: Direct

Name: rbfA [H]

Synonym: NMCC_1285

Alternate gene names: 161870244

Gene position: 1286710-1287081 (Clockwise)

Preceding gene: 161870242

Following gene: 161870245

Centisome position: 59.75

GC content: 54.3

Gene sequence:

>372_bases
ATGAGAAAACCCCAACGCGGCTATGCCCGCCAAGACCGTGTCAAAGAACAAATTATGCGCGAGCTTGCCGAACTCGTCCG
TACCGGACTGAAAGACCCGCGCGCCGGCTTCATTACCGTCAACGAAGTCGAAGTTACCCGCGATTACAGCCACGCCACCG
TGTTCTACACCATTTTAAACCAAGACGCGCGCGAAATTACGGAAGAAGTGCTGGAACACGCGCGCGGACACCTCCGCAGC
GAATTGGCCAAACGCATCAAGCTGTTCAAAATCCCCGAGCTGCATTTCAAATACGACGAATCGTTGGAACGCGGTTTGAA
CCTGTCCGCCCTTATCGATCAAGTGGCGGCGGAAAAACCGGTTGAAGACTGA

Upstream 100 bases:

>100_bases
TACCTTAAAATCCCGCCGATTAGGCTATAATACGCCCTTTCGCAACCGCCCCGGCGGCAAAAATGCCGTCTGAAACCAAA
TCTGAAATCTGAGGATATTC

Downstream 100 bases:

>100_bases
CGGATATGCCCATGCCGTCCGAACATCGAACCATGAATACAGGCAAACCCCAAAAACGTGCCGTCAACGGTGTTTTGCTC
TTGGACAAACCCGAAGGCCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILNQDAREITEEVLEHARGHLRS
ELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEKPVED

Sequences:

>Translated_123_residues
MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILNQDAREITEEVLEHARGHLRS
ELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEKPVED
>Mature_123_residues
MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILNQDAREITEEVLEHARGHLRS
ELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEKPVED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=38.3928571428571, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14347; Mature: 14347

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHHH
QDAREITEEVLEHARGHLRSELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
VED
CCC
>Mature Secondary Structure
MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHHH
QDAREITEEVLEHARGHLRSELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
VED
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA