BacMap

Definition	Neisseria meningitidis 053442, complete genome.
Accession	NC_010120
Length	2,153,416

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The map label for this gene is yddA [C]

Identifier: 161869963

GI number: 161869963

Start: 998211

End: 998762

Strand: Reverse

Name: yddA [C]

Synonym: NMCC_0996

Alternate gene names: 161869963

Gene position: 998762-998211 (Counterclockwise)

Preceding gene: 161869964

Following gene: 161869962

Centisome position: 46.38

GC content: 59.6

Gene sequence:

>552_bases
TTGAGCGGCATCAACATCAAACTCAAAAGCGGCGATTCCCTGCTGATACGCGGCCCGAGCGGTTGCGGCAAAACTTCGTT
GCTGCGCGCGCTGGCTGGGCTTTGGCCGTTCGGCAGCAGCGGCAAAGTCAGCCGTCCGCCGCATCAAGACATCCTCTTCC
TGCCGCAACGCCCGTACACGGCACAGGGCAGCCTGCGCGACGCGGTTTGTTATCCCGACATCGACAAACAGCATCCGGAG
CTAATCGAAGCCATGAACACCTGCCGCTTGGGTTATCTGATTGACAAATTGGACAAAACAGACGACTGGCAGCACAAACT
CTCCCTGGGCGAACTGCAACGCGTCGCCTTCGTCCGCGCCCTGCTTTCCAAGCCCAAAATCGTCCTGCTCGACGAAGCCA
CCGCCGCCTTGGACGAACCGGCCGAAGCCGCGCTCTACCGCGCCTTAAAGCAAAAACTGCCCGACAGCATCATCATCAGC
ATCGGACACCGAAGCACGCTCAACGCGTTCCACAATATGCGCCTCGATGTCGGCAACGTTGCCTGCGGTTGA

Upstream 100 bases:

>100_bases
CGAGATTTCAGCGTTTTTTACTCTATTTGTTCCTTGTGCAAAAACTAACAGTCCCCCACAGGAAAACGTCGCTCTGTTCC
GCCACAACGGCGAAATCCTG

Downstream 100 bases:

>100_bases
ACGATGCCGTCTGAAGCCGTTTTCAGACGGCATCGTTCAAATTGGAAAGGCGCGCGAAAACAACGTACAATAAACCCGTT
TACCACCCCTCGGAATGCCG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSGINIKLKSGDSLLIRGPSGCGKTSLLRALAGLWPFGSSGKVSRPPHQDILFLPQRPYTAQGSLRDAVCYPDIDKQHPE
LIEAMNTCRLGYLIDKLDKTDDWQHKLSLGELQRVAFVRALLSKPKIVLLDEATAALDEPAEAALYRALKQKLPDSIIIS
IGHRSTLNAFHNMRLDVGNVACG

Sequences:

>Translated_183_residues
MSGINIKLKSGDSLLIRGPSGCGKTSLLRALAGLWPFGSSGKVSRPPHQDILFLPQRPYTAQGSLRDAVCYPDIDKQHPE
LIEAMNTCRLGYLIDKLDKTDDWQHKLSLGELQRVAFVRALLSKPKIVLLDEATAALDEPAEAALYRALKQKLPDSIIIS
IGHRSTLNAFHNMRLDVGNVACG
>Mature_182_residues
SGINIKLKSGDSLLIRGPSGCGKTSLLRALAGLWPFGSSGKVSRPPHQDILFLPQRPYTAQGSLRDAVCYPDIDKQHPEL
IEAMNTCRLGYLIDKLDKTDDWQHKLSLGELQRVAFVRALLSKPKIVLLDEATAALDEPAEAALYRALKQKLPDSIIISI
GHRSTLNAFHNMRLDVGNVACG

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9945308, Length=181, Percent_Identity=39.2265193370166, Blast_Score=125, Evalue=2e-29,
Organism=Homo sapiens, GI7262393, Length=182, Percent_Identity=37.3626373626374, Blast_Score=119, Evalue=1e-27,
Organism=Homo sapiens, GI4826958, Length=197, Percent_Identity=39.0862944162437, Blast_Score=118, Evalue=2e-27,
Organism=Homo sapiens, GI4506341, Length=185, Percent_Identity=34.5945945945946, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI4505771, Length=179, Percent_Identity=30.1675977653631, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI9961252, Length=179, Percent_Identity=30.1675977653631, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI9961250, Length=179, Percent_Identity=30.1675977653631, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI148612844, Length=203, Percent_Identity=29.5566502463054, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI255708477, Length=203, Percent_Identity=29.5566502463054, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI42741659, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI21536378, Length=182, Percent_Identity=30.2197802197802, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI9955968, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI9955966, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI45243524, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI42490749, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787772, Length=168, Percent_Identity=35.1190476190476, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787112, Length=180, Percent_Identity=28.3333333333333, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788165, Length=158, Percent_Identity=32.2784810126582, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787370, Length=164, Percent_Identity=28.0487804878049, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1786563, Length=147, Percent_Identity=36.0544217687075, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787143, Length=183, Percent_Identity=25.6830601092896, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789891, Length=171, Percent_Identity=29.8245614035088, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558960, Length=188, Percent_Identity=38.2978723404255, Blast_Score=126, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17532411, Length=183, Percent_Identity=34.9726775956284, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17542146, Length=184, Percent_Identity=34.7826086956522, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17532409, Length=185, Percent_Identity=32.4324324324324, Blast_Score=115, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17564250, Length=189, Percent_Identity=33.8624338624339, Blast_Score=107, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI72000518, Length=188, Percent_Identity=34.0425531914894, Blast_Score=107, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI72000520, Length=166, Percent_Identity=34.3373493975904, Blast_Score=96, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17558664, Length=200, Percent_Identity=31.5, Blast_Score=84, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17543740, Length=180, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193202349, Length=180, Percent_Identity=29.4444444444444, Blast_Score=79, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17565938, Length=179, Percent_Identity=25.6983240223464, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17533971, Length=179, Percent_Identity=27.3743016759777, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=195, Percent_Identity=31.7948717948718, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=184, Percent_Identity=33.1521739130435, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551702, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551700, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17556528, Length=199, Percent_Identity=30.6532663316583, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=196, Percent_Identity=28.0612244897959, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=194, Percent_Identity=30.9278350515464, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=180, Percent_Identity=25.5555555555556, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=186, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=179, Percent_Identity=27.9329608938547, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=179, Percent_Identity=27.9329608938547, Blast_Score=63, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6325110, Length=184, Percent_Identity=40.2173913043478, Blast_Score=128, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6324985, Length=192, Percent_Identity=32.2916666666667, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24643394, Length=182, Percent_Identity=34.6153846153846, Blast_Score=118, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638558, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638550, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638552, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638554, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638546, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638556, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638548, Length=182, Percent_Identity=36.8131868131868, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24659289, Length=179, Percent_Identity=29.608938547486, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281363262, Length=183, Percent_Identity=28.4153005464481, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24653245, Length=183, Percent_Identity=28.4153005464481, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85726357, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136662, Length=177, Percent_Identity=28.8135593220339, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45552341, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45552359, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI45550972, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24583969, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI45552353, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI45552335, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI45552343, Length=198, Percent_Identity=26.2626262626263, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 20056; Mature: 19924

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGINIKLKSGDSLLIRGPSGCGKTSLLRALAGLWPFGSSGKVSRPPHQDILFLPQRPYT
CCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC
AQGSLRDAVCYPDIDKQHPELIEAMNTCRLGYLIDKLDKTDDWQHKLSLGELQRVAFVRA
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LLSKPKIVLLDEATAALDEPAEAALYRALKQKLPDSIIISIGHRSTLNAFHNMRLDVGNV
HHCCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCEEECCCC
ACG
CCC
>Mature Secondary Structure 
SGINIKLKSGDSLLIRGPSGCGKTSLLRALAGLWPFGSSGKVSRPPHQDILFLPQRPYT
CCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC
AQGSLRDAVCYPDIDKQHPELIEAMNTCRLGYLIDKLDKTDDWQHKLSLGELQRVAFVRA
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LLSKPKIVLLDEATAALDEPAEAALYRALKQKLPDSIIISIGHRSTLNAFHNMRLDVGNV
HHCCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCEEECCCC
ACG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]