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The map label for this gene is orn [H]

Identifier: 161525395

GI number: 161525395

Start: 2440914

End: 2441549

Strand: Reverse

Name: orn [H]

Synonym: Bmul_2225

Alternate gene names: 161525395

Gene position: 2441549-2440914 (Counterclockwise)

Preceding gene: 161525399

Following gene: 161525392

Centisome position: 70.8

GC content: 65.57

Gene sequence:

>636_bases
ATGACCGATACCGCCGCTTCCGCCAGCCAGCCCGCACTCGTGCGCAACGAGTTGAACCTCGTCTGGCTCGACATGGAGAT
GACGGGCCTCGACCCGGATAACGACCGCATCATCGAGATCGCGGTCGTCGTGACCAACTCCACGCTCGAGATCGCCGTCG
AAGGTCCCGTGTTCGCGATCCACCAGAGCGACGAAACGCTCGCGAAGATGGACGACTGGAACAAGTCGACGCACGGCCGC
TCGGGTCTGATCGACCGCGTGCGCGCATCGACCGTGACCGAAGCGGAGGCCGCCGCGCAGCTGCAGGCCTTCCTCGCGCA
ATACGTGCCGCCCGGCAAGTCGCCGATGTGCGGCAACTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTGGATGCCGG
AGCTCGAACGCTTCTTCCACTACCGCAACCTCGACGTCAGCACGCTGAAGGAGCTCTGCCGCCGCTGGCAGCCGGCGATC
TACAAGGGATTCCAGAAGCGTGCGATGCATACGGCGCTGGCCGACATCCACGAATCGATCGACGAGCTCAAGTACTATCG
CCAGCATTTCCTGATTCCGGCGGCTTCCGCAGCCTCCGCAGCCGCATCGGCGGGCGAGTCGGCGCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
TCTATGCGAGAATTATATGTTCTTGCGGACGGCGCCCGCAGAGGCGAGGCCGGCCGTCCGGACGGCGCCGCGCGCCGCCT
GCCATTTTCCAGGATGACTC

Downstream 100 bases:

>100_bases
GCGGGACGGCACGCGCTCAGCGCGGCGCGCGCTGCGCGCTTTTCGGGCGGAACGCCGCGACCACCGCGGCGTCGGTCTCG
ATGTACGGCCCGCCGATCAG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAASAAASAGESAPAA

Sequences:

>Translated_211_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAASAAASAGESAPAA
>Mature_210_residues
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEIAVEGPVFAIHQSDETLAKMDDWNKSTHGRS
GLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYRQHFLIPAASAASAAASAGESAPAA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=180, Evalue=9e-46,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=62.5, Blast_Score=243, Evalue=5e-66,
Organism=Caenorhabditis elegans, GI17557752, Length=182, Percent_Identity=42.3076923076923, Blast_Score=160, Evalue=5e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=197, Percent_Identity=38.0710659898477, Blast_Score=125, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=41.9540229885057, Blast_Score=160, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23439; Mature: 23308

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEIAVEGPVFAI
CCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRQHFLIPAASAASAAASAGESAPAA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEIAVEGPVFAI
CCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRQHFLIPAASAASAAASAGESAPAA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA