| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is linX [H]
Identifier: 161525138
GI number: 161525138
Start: 2166217
End: 2167005
Strand: Reverse
Name: linX [H]
Synonym: Bmul_1966
Alternate gene names: 161525138
Gene position: 2167005-2166217 (Counterclockwise)
Preceding gene: 161525139
Following gene: 161525137
Centisome position: 62.84
GC content: 69.33
Gene sequence:
>789_bases ATGAAATCGAACTCTCTTCGTCTCGCCGGTAAGCGGGCGTTCATTACCGGCGCCGCGGGCGGCCTCGGCAGCGCGATCGC GAGCCGGATGACCGAGCACGGCGCGCGCGTGTTCCTGACCGACAACGGCGACGCCGCCGCGCTCGCGCGGCTCGCGGACC GCATCAACGGTGCGTGCGGCGAGCAGGTCGCCTGGAGCGCGGTGCAGGACGTACGCGACGAGGCGCGCTGGCAGGCGCTG CTCGCCGAGGCGGCCGACGCGATGGGCGGCGTGTCGGTGCTCGTGAACAACGCGGGCGTCGGCTCGCGCGGCGCGCTCGC GTCGATTGCGCAGAACGAGTGGCGCCGCGTGATGGAAGTCAACGTCGAAAGCATCATGCTCGGCTGCAAGCACGCGATGC CGTATCTGCGCGACGCGCAGCCCGCATCGATCGTCAACATCTCGTCGGTCGCCGCGTTTCGCGTGGACCCCGACCTGATC GCGTACAACACGTCGAAGGCGGCGGTCGCGATGCTGACGAAGTCGATCGCGATCGACTGCACGCGCAACCGTGTCGACGT GCGCTGCAATTCCGTGCATCCGGCCTACGTGCGCACCGGCATGGTCGCGGCCGTGTTCGAGCAGCTCGGCGACGAAGCCG CGACGCGCGAACTCACGCGCCACATCCCGATGGGACGGCTCGGCGAACCGGACGACGTCGCGTATGCGGTGCTGTATCTC GCCTCCGACGAAAGCCGGTTCGTGACCGCGTCGGAGCTCGTCGTCGACGGCGGGCTGTGTCCGGCGTAA
Upstream 100 bases:
>100_bases ACATCTCCGCGTTCGGCGGCTGACCGGCCGGCGCGAACCGTCCCGCCCGCGTCACGGCACGGCGCGCGCGGCTTGCTGAC TCTCATTCGAATCGAACGAC
Downstream 100 bases:
>100_bases GCGTCGATCGTGCGGGGCGGCGCGATGCCGGCCCGTTCGTGCGGTGCCGCGCGACGCGCGCGGCGGCCGCTTCAACGTGC GTGCGGTCGCCGCGTCGGAA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MKSNSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTDNGDAAALARLADRINGACGEQVAWSAVQDVRDEARWQAL LAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEVNVESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLI AYNTSKAAVAMLTKSIAIDCTRNRVDVRCNSVHPAYVRTGMVAAVFEQLGDEAATRELTRHIPMGRLGEPDDVAYAVLYL ASDESRFVTASELVVDGGLCPA
Sequences:
>Translated_262_residues MKSNSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTDNGDAAALARLADRINGACGEQVAWSAVQDVRDEARWQAL LAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEVNVESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLI AYNTSKAAVAMLTKSIAIDCTRNRVDVRCNSVHPAYVRTGMVAAVFEQLGDEAATRELTRHIPMGRLGEPDDVAYAVLYL ASDESRFVTASELVVDGGLCPA >Mature_262_residues MKSNSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTDNGDAAALARLADRINGACGEQVAWSAVQDVRDEARWQAL LAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEVNVESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLI AYNTSKAAVAMLTKSIAIDCTRNRVDVRCNSVHPAYVRTGMVAAVFEQLGDEAATRELTRHIPMGRLGEPDDVAYAVLYL ASDESRFVTASELVVDGGLCPA
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=30.5882352941176, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=30.952380952381, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=31.4741035856574, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI7705925, Length=257, Percent_Identity=29.5719844357977, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=29.9212598425197, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=27.3076923076923, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=28.3524904214559, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=32.6424870466321, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI40254986, Length=220, Percent_Identity=29.0909090909091, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=24.7967479674797, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.5698924731183, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=26.7716535433071, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4758504, Length=267, Percent_Identity=28.4644194756554, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.0194552529183, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1790717, Length=258, Percent_Identity=30.2325581395349, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=32.046332046332, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1786812, Length=265, Percent_Identity=29.811320754717, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=26.8482490272374, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1789208, Length=266, Percent_Identity=27.8195488721804, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=27.8884462151394, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=27.843137254902, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=27.8884462151394, Blast_Score=85, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=34.6303501945525, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=33.4615384615385, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17561402, Length=269, Percent_Identity=28.996282527881, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=31.4606741573034, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=28.7878787878788, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=27.2373540856031, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=30.188679245283, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=28.3582089552239, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=31.8681318681319, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.1368821292776, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.0566037735849, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=27.6978417266187, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=28.7822878228782, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30.4, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=27.6515151515151, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=28.5171102661597, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.811320754717, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=26.8939393939394, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=26.615969581749, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=29.3172690763052, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=27.3764258555133, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17544670, Length=276, Percent_Identity=26.8115942028986, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17508651, Length=261, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71982365, Length=177, Percent_Identity=28.2485875706215, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203117, Length=203, Percent_Identity=26.1083743842365, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=26.5625, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=251, Percent_Identity=25.8964143426295, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=33.4586466165414, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=32.6848249027237, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=32.9501915708812, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=32.046332046332, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=32.6771653543307, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644337, Length=182, Percent_Identity=40.6593406593407, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21357673, Length=271, Percent_Identity=26.1992619926199, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076933, Length=195, Percent_Identity=25.1282051282051, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24584748, Length=195, Percent_Identity=25.1282051282051, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27692; Mature: 27692
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTDNGDAAALARLADRINGACG CCCCCEEEECCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC EQVAWSAVQDVRDEARWQALLAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH NVESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLIAYNTSKAAVAMLTKSIAIDC HHHHHHHHHHHHCCHHCCCCCCCEEEHHHEEEEECCCCEEEECCCHHHHHHHHHHHEEEE TRNRVDVRCNSVHPAYVRTGMVAAVFEQLGDEAATRELTRHIPMGRLGEPDDVAYAVLYL ECCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHEEEEEEE ASDESRFVTASELVVDGGLCPA ECCCCCEEEHHHEEECCCCCCC >Mature Secondary Structure MKSNSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTDNGDAAALARLADRINGACG CCCCCEEEECCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC EQVAWSAVQDVRDEARWQALLAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH NVESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLIAYNTSKAAVAMLTKSIAIDC HHHHHHHHHHHHCCHHCCCCCCCEEEHHHEEEEECCCCEEEECCCHHHHHHHHHHHEEEE TRNRVDVRCNSVHPAYVRTGMVAAVFEQLGDEAATRELTRHIPMGRLGEPDDVAYAVLYL ECCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHEEEEEEE ASDESRFVTASELVVDGGLCPA ECCCCCEEEHHHEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]