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The map label for this gene is ybhD [H]

Identifier: 161525102

GI number: 161525102

Start: 2116889

End: 2117782

Strand: Direct

Name: ybhD [H]

Synonym: Bmul_1930

Alternate gene names: 161525102

Gene position: 2116889-2117782 (Clockwise)

Preceding gene: 161525090

Following gene: 161525109

Centisome position: 61.39

GC content: 72.04

Gene sequence:

>894_bases
ATGGATCTGAATCTTCGCGACATTCGCGCGTTCGTCACCGTCGCGCAGGCCGGCAACTTCACGCGCGCGGCCGCGCGGCT
GCATTTGTCGCAGCCTGCACTGACCGTGCAGATCCGGCGGCTCGAGGAAATCGTCGGCGCGCGGCTGTTCGACCGCAACA
GCCGCAGCGTCGCGCTGACGCAGACGGGCCGCGAGCTGCTGCCGCTGCTGCAGCGCTCGCTCGACGACATGGAGCGCGTG
CTGCGCGATGCGCGCGCGCTCGGCGAAGGCGCGAGCGGCACGGTGCGGCTCGCGTGCCTGCCGACTTTCGCGTCGAGCGT
GCTGCCCGAATTGATCCAGACGTTTCGCGGCGACGTACCGCGCGCGGCGTTCGAGATTCGCGACGGCGTCGCGAGCCTCG
TGACCGCGCTCGTGCGCAACGAGGAAGCCGATCTCGGCTTCACCGGCGGCGACGCGTTCGATGCGTCGCTCGACGTGCTG
TACTCCGGCCACGATCGCCTCGTCGCGATCTGTCCGCGCGATCATCCGCTCGCGCGCAAGCGGCGCGTGACGACCGCCGA
TCTCGCGCGCGTGCCGCTCGTGCTGACCGCGCGCGGCACGAGCGTGCGCAGCGTCGTCGACGCGGCGCTCGACGCGGCCG
GCTGCGTGCCCGAGCTCGCGTGCGAGCCGACCTACATGATGACGGCCGTCGCGATGGTGCGCGGCGGGCTCGGCGTGACG
ATCCTGCCCGCGACCGCGCGCGAGGTGCGCGCCGAACCCGATCTCGTCGCCAAGCCGATCGACGATCCGGCGTTCGTGCG
GCCCGTCGCGCTCGTATGCAAGCGCGGACGCACGCTGCCGCGCGTCGCGCAGGCGTTCGTCGACACGATGCTCGCGCACT
GGCGGCGCACCTGA

Upstream 100 bases:

>100_bases
ATCGGTTGTCTCCTGTCTTGTCTTTTGTTGGAGACGAGCGTAAGGTCCGCGCAGCGATAGCACAATTGAAATGATTTGAT
CGCAGCAATCACGACCCGTT

Downstream 100 bases:

>100_bases
GCCGCGCGTGGCGGGCGATGCGCGCGGCGGGCGCGCCAGCCGGCCTCGCGCGCGCCGCGGGTAATTACGCTGCGTCGGCC
TCGCCCGTATCGGCGTTCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDLNLRDIRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEEIVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARALGEGASGTVRLACLPTFASSVLPELIQTFRGDVPRAAFEIRDGVASLVTALVRNEEADLGFTGGDAFDASLDVL
YSGHDRLVAICPRDHPLARKRRVTTADLARVPLVLTARGTSVRSVVDAALDAAGCVPELACEPTYMMTAVAMVRGGLGVT
ILPATAREVRAEPDLVAKPIDDPAFVRPVALVCKRGRTLPRVAQAFVDTMLAHWRRT

Sequences:

>Translated_297_residues
MDLNLRDIRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEEIVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARALGEGASGTVRLACLPTFASSVLPELIQTFRGDVPRAAFEIRDGVASLVTALVRNEEADLGFTGGDAFDASLDVL
YSGHDRLVAICPRDHPLARKRRVTTADLARVPLVLTARGTSVRSVVDAALDAAGCVPELACEPTYMMTAVAMVRGGLGVT
ILPATAREVRAEPDLVAKPIDDPAFVRPVALVCKRGRTLPRVAQAFVDTMLAHWRRT
>Mature_297_residues
MDLNLRDIRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEEIVGARLFDRNSRSVALTQTGRELLPLLQRSLDDMERV
LRDARALGEGASGTVRLACLPTFASSVLPELIQTFRGDVPRAAFEIRDGVASLVTALVRNEEADLGFTGGDAFDASLDVL
YSGHDRLVAICPRDHPLARKRRVTTADLARVPLVLTARGTSVRSVVDAALDAAGCVPELACEPTYMMTAVAMVRGGLGVT
ILPATAREVRAEPDLVAKPIDDPAFVRPVALVCKRGRTLPRVAQAFVDTMLAHWRRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=27.1186440677966, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=32.5342465753425, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=32.0819112627986, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788887, Length=284, Percent_Identity=31.3380281690141, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=28.2229965156794, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789204, Length=254, Percent_Identity=30.3149606299213, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790399, Length=312, Percent_Identity=28.8461538461538, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=29.0697674418605, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=28.135593220339, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081904, Length=225, Percent_Identity=31.1111111111111, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788296, Length=294, Percent_Identity=27.2108843537415, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=27.7566539923954, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790208, Length=253, Percent_Identity=28.4584980237154, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787589, Length=203, Percent_Identity=32.0197044334975, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=25.3061224489796, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790262, Length=294, Percent_Identity=26.8707482993197, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082132, Length=167, Percent_Identity=28.1437125748503, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=247, Percent_Identity=28.3400809716599, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787806, Length=293, Percent_Identity=23.2081911262799, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=178, Percent_Identity=27.5280898876405, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=304, Percent_Identity=25.9868421052632, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32210; Mature: 32210

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNLRDIRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEEIVGARLFDRNSRSVALT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
QTGRELLPLLQRSLDDMERVLRDARALGEGASGTVRLACLPTFASSVLPELIQTFRGDVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCC
RAAFEIRDGVASLVTALVRNEEADLGFTGGDAFDASLDVLYSGHDRLVAICPRDHPLARK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCEEEECCCCCCHHHH
RRVTTADLARVPLVLTARGTSVRSVVDAALDAAGCVPELACEPTYMMTAVAMVRGGLGVT
HCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCEE
ILPATAREVRAEPDLVAKPIDDPAFVRPVALVCKRGRTLPRVAQAFVDTMLAHWRRT
EECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLNLRDIRAFVTVAQAGNFTRAAARLHLSQPALTVQIRRLEEIVGARLFDRNSRSVALT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
QTGRELLPLLQRSLDDMERVLRDARALGEGASGTVRLACLPTFASSVLPELIQTFRGDVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCC
RAAFEIRDGVASLVTALVRNEEADLGFTGGDAFDASLDVLYSGHDRLVAICPRDHPLARK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCEEEECCCCCCHHHH
RRVTTADLARVPLVLTARGTSVRSVVDAALDAAGCVPELACEPTYMMTAVAMVRGGLGVT
HCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCEE
ILPATAREVRAEPDLVAKPIDDPAFVRPVALVCKRGRTLPRVAQAFVDTMLAHWRRT
EECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]