Click here to switch to the map view.

The map label for this gene is kdsB1 [H]

Identifier: 161523929

GI number: 161523929

Start: 821282

End: 822073

Strand: Reverse

Name: kdsB1 [H]

Synonym: Bmul_0749

Alternate gene names: 161523929

Gene position: 822073-821282 (Counterclockwise)

Preceding gene: 161523930

Following gene: 161523928

Centisome position: 23.84

GC content: 71.46

Gene sequence:

>792_bases
ATGACTCATCCGCAACCCTTCATCGCCGTCATCCCTGCCCGGCTCGCGTCGACGCGCCTGCCGAACAAGCCGCTCGCCGA
TCTCGGCGGCAAGCCGATGGTCGTGCGCGTGGCCGAACGCGCGCGCGAAGCGGGCGCGCAGCAGGTGCTGATCGCGTCCG
ACGCGCAGAGCGTGCTCGACGCGGCGCGCGAACACGGCTTCGACGCGGTGCTCACGCGCGCCGATCATCCGTCCGGCACC
GACCGGCTCGCGGAAGTCGCGGCCGCGTGCGGCTGGCAGGACGACACGGTGGTCGTCAACGTGCAGGGCGACGAGCCGCT
CATCGATCCCGTGCTGGTGCGCGACGTTGCGTCGCACCTCGCCGCGCATCCGGCCTGCGCGATCGCGACCGCCGCGCACC
CGATTCACGACGCGGCCGACGTGTTCAACCCCAACGTCGTGAAAGTCGCGCTCGATGCGCAAAGCGTCGCGCTCTACTTC
TCGCGCGCGCCGATTCCGTGGAGCCGCGACGCCTATCAGCCGCACTGGCCCGACGTCGCCGCGATGCCGGCCCCGGCTGC
GCCCGTCTATCGGCACATCGGCCTGTACGCCTATCGCGCGCGTTTCCTGCGCACCTATCCGTCGCTCGCGCAGGCGCCGA
TCGAGCAGGCCGAGCAGCTCGAACAGCTGCGCGCGCTGTGGCACGGCGAACGCATCGCGGTGCTCGTCACCGAGCGCGCG
CCCGCGGCGGGCGTCGACACGCCGGCCGACCTCGCGCGGGTGCAGGCCCTTTTTCGGCCGGATTCAAAATAA

Upstream 100 bases:

>100_bases
CCACGCGGCCGCGCGCCGCATCCCGGCCGCCGCGGCCGCCGGGCGCGCCGCCGTCGCGACGGCGGCGCCCGCCCCGACCT
CCTCTCACCGTCCGATTCCG

Downstream 100 bases:

>100_bases
CCCATGGCATAATCGGGCGATTGTGCGAGCCGTCTGCGACCTGCGCGTGCTCGCTTGCTCCCGCCGCGGCCCCTGCCGGC
AGCCGCGCGTCGCCCGATCG

Product: 3-deoxy-manno-octulosonate cytidylyltransferase

Products: NA

Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase 1; CKS 1; CMP-KDO synthase 1 [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTHPQPFIAVIPARLASTRLPNKPLADLGGKPMVVRVAERAREAGAQQVLIASDAQSVLDAAREHGFDAVLTRADHPSGT
DRLAEVAAACGWQDDTVVVNVQGDEPLIDPVLVRDVASHLAAHPACAIATAAHPIHDAADVFNPNVVKVALDAQSVALYF
SRAPIPWSRDAYQPHWPDVAAMPAPAAPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRALWHGERIAVLVTERA
PAAGVDTPADLARVQALFRPDSK

Sequences:

>Translated_263_residues
MTHPQPFIAVIPARLASTRLPNKPLADLGGKPMVVRVAERAREAGAQQVLIASDAQSVLDAAREHGFDAVLTRADHPSGT
DRLAEVAAACGWQDDTVVVNVQGDEPLIDPVLVRDVASHLAAHPACAIATAAHPIHDAADVFNPNVVKVALDAQSVALYF
SRAPIPWSRDAYQPHWPDVAAMPAPAAPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRALWHGERIAVLVTERA
PAAGVDTPADLARVQALFRPDSK
>Mature_262_residues
THPQPFIAVIPARLASTRLPNKPLADLGGKPMVVRVAERAREAGAQQVLIASDAQSVLDAAREHGFDAVLTRADHPSGTD
RLAEVAAACGWQDDTVVVNVQGDEPLIDPVLVRDVASHLAAHPACAIATAAHPIHDAADVFNPNVVKVALDAQSVALYFS
RAPIPWSRDAYQPHWPDVAAMPAPAAPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRALWHGERIAVLVTERAP
AAGVDTPADLARVQALFRPDSK

Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria [H]

COG id: COG1212

COG function: function code M; CMP-2-keto-3-deoxyoctulosonic acid synthetase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsB family [H]

Homologues:

Organism=Escherichia coli, GI1787147, Length=253, Percent_Identity=51.7786561264822, Blast_Score=265, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329
- InterPro:   IPR004528 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: =2.7.7.38 [H]

Molecular weight: Translated: 28338; Mature: 28207

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPQPFIAVIPARLASTRLPNKPLADLGGKPMVVRVAERAREAGAQQVLIASDAQSVLD
CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCEEEEECCHHHHHH
AAREHGFDAVLTRADHPSGTDRLAEVAAACGWQDDTVVVNVQGDEPLIDPVLVRDVASHL
HHHHCCCHHEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
AAHPACAIATAAHPIHDAADVFNPNVVKVALDAQSVALYFSRAPIPWSRDAYQPHWPDVA
HHCCHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHEEEEEECCCCCCCCCCCCCCCCCCC
AMPAPAAPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRALWHGERIAVLVTERA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
PAAGVDTPADLARVQALFRPDSK
CCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
THPQPFIAVIPARLASTRLPNKPLADLGGKPMVVRVAERAREAGAQQVLIASDAQSVLD
CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCEEEEECCHHHHHH
AAREHGFDAVLTRADHPSGTDRLAEVAAACGWQDDTVVVNVQGDEPLIDPVLVRDVASHL
HHHHCCCHHEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
AAHPACAIATAAHPIHDAADVFNPNVVKVALDAQSVALYFSRAPIPWSRDAYQPHWPDVA
HHCCHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHEEEEEECCCCCCCCCCCCCCCCCCC
AMPAPAAPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRALWHGERIAVLVTERA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
PAAGVDTPADLARVQALFRPDSK
CCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA