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The map label for this gene is ybaK [H]

Identifier: 161523919

GI number: 161523919

Start: 812369

End: 812860

Strand: Direct

Name: ybaK [H]

Synonym: Bmul_0739

Alternate gene names: 161523919

Gene position: 812369-812860 (Clockwise)

Preceding gene: 161523917

Following gene: 161523920

Centisome position: 23.56

GC content: 66.26

Gene sequence:

>492_bases
ATGAGCAAATCGAGACACGTATCAGAAACGCCGGCGACCCAGCTGCTGCGCCGGCACGGCGTCGCGTTCGGCGAGCATCC
GTACGCATACGTCGAACACGGCGGCACCGGCGAATCGGCGCGGCAGCTCGGCGTCGACGAGCACATCGTCGTGAAGACGC
TCGTGATGGAAGACGAGCATGCGAAGCCGCTGATCGTGCTGATGCACGGCGATCGCACGGTGTCGACGAAGAATCTCGCG
CGCCAGATCGGCGCGAAGCGCGTCGAGCCCTGCAAGCCGGAGGTCGCGAACCGTCATTCCGGCTATCTGGTCGGCGGCAC
GTCGCCGTTCGGCACGCGCAAGTCGATGCCGGTCTACGTCGAGTCGACGATTCTCGACTTGCCGACGATCTACCTCAACG
GCGGCCGCCGCGGCTATCTGGTGAGCATCGCGCCGTCGGTGCTGACGACGCTGCTCGGCGCGAAGCCCGTGCAGTGCGCG
AGCGTCGACTGA

Upstream 100 bases:

>100_bases
GAGCGGACCGATGCGTGCCGTGCGCCGCGCAGCGGGCCGCGAGTATAGCCCGGCGCGCGCCGGCGGTTCGTCGCGCGTCG
TTCGCCATTAGAATGCCGCC

Downstream 100 bases:

>100_bases
GGGTTTCACCTTCGTGGCAGGTCGCGCGCGTTCGGTAGAATGGGCGCCGTTTCGGCTCGCCGCACCGCGTCGGCGCCGGC
CGGCCGGCGGTCCGCGCTGC

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYAYVEHGGTGESARQLGVDEHIVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKSMPVYVESTILDLPTIYLNGGRRGYLVSIAPSVLTTLLGAKPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYAYVEHGGTGESARQLGVDEHIVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKSMPVYVESTILDLPTIYLNGGRRGYLVSIAPSVLTTLLGAKPVQCA
SVD
>Mature_162_residues
SKSRHVSETPATQLLRRHGVAFGEHPYAYVEHGGTGESARQLGVDEHIVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKSMPVYVESTILDLPTIYLNGGRRGYLVSIAPSVLTTLLGAKPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=33.75, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17670; Mature: 17538

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSRHVSETPATQLLRRHGVAFGEHPYAYVEHGGTGESARQLGVDEHIVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEEEECCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKSMPVYV
CCCEEEEEECCCEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
ESTILDLPTIYLNGGRRGYLVSIAPSVLTTLLGAKPVQCASVD
EEEEECCCEEEECCCCCEEEEEECHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure 
SKSRHVSETPATQLLRRHGVAFGEHPYAYVEHGGTGESARQLGVDEHIVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEEEECCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKSMPVYV
CCCEEEEEECCCEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
ESTILDLPTIYLNGGRRGYLVSIAPSVLTTLLGAKPVQCASVD
EEEEECCCEEEECCCCCEEEEEECHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]