| Definition | Staphylococcus aureus subsp. aureus USA300_TCH1516 chromosome, complete genome. |
|---|---|
| Accession | NC_010079 |
| Length | 2,872,915 |
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The map label for this gene is oppD2 [H]
Identifier: 161509546
GI number: 161509546
Start: 1416328
End: 1417104
Strand: Reverse
Name: oppD2 [H]
Synonym: USA300HOU_1314
Alternate gene names: 161509546
Gene position: 1417104-1416328 (Counterclockwise)
Preceding gene: 161509547
Following gene: 161509545
Centisome position: 49.33
GC content: 31.66
Gene sequence:
>777_bases ATGATGAGTCTCATTGATATACAAAATTTAACAATAAAGAATACTAGTGAGAAATCTCTTATTAAAGGGATTGATTTGAA AATTTTTAGTCAACAGATTAATGCCTTGATTGGAGAGAGCGGCGCTGGAAAAAGTTTGATTGCTAAAGCTTTACTTGAAT ATTTACCATTTGATTTAAGCTGCACGTATGATTCGTACCAATTTGATGGGGAAAATGTTAGTAGATTGAGTCAATATTAT GGTCATACAATTGGCTATATTTCTCAAAATTATGCAGAAAGTTTTAACGACCATACTAAATTAGGTAAACAGTTAACTGC GATTTATCGTAAGCATTATAAAGGTAGTAAAGAAGAGGCTTTGTCCAAAGTTGATAAGGCTTTGTCGTGGGTTAATTTAC AAAGCAAAGATATATTAAATAAATATAGTTTCCAACTTTCTGGGGGCCAACTTGAACGCGTATACATAGCAAGCGTTCTC ATGTTGGAGCCTAAATTAATCATTGCAGACGAACCAGTTGCATCATTGGATGCTTTGAACGGTAATCAAGTGATGGATTT ATTACAGCATATTGTATTAGAACATGGTCAAACATTATTTATTATCACACATAACTTAAGTCATGTATTGAAATATTGTC AGTACATTTATGTTTTAAAAGAAGGTCAAATCATTGAACGAGGTAATATTAATCATTTCAAGTATGAGCATTTGCATCCG TATACTGAACGTCTAATTAAATATAGAACACAATTAAAGAGGGATTACTATGATTGA
Upstream 100 bases:
>100_bases ATGTTGATTGCACCTGCTTCAGTCATTGCTATAACTATTTTAATTTTTAATTTAACCGGTGATGCACTAAGAGATAGATT GCTGAAACAACGGGGTGAAT
Downstream 100 bases:
>100_bases GTTAAAACATGTGACTTTTGGTTATAATAAAAAGCAGATGGTGCTACAAGATATCAATATTACTATACCTGATGGAGAAA ATGTTGGTATTTTAGGCGAA
Product: oligopeptide ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MMSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSCTYDSYQFDGENVSRLSQYY GHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEALSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVL MLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHP YTERLIKYRTQLKRDYYD
Sequences:
>Translated_258_residues MMSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSCTYDSYQFDGENVSRLSQYY GHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEALSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVL MLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHP YTERLIKYRTQLKRDYYD >Mature_258_residues MMSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSCTYDSYQFDGENVSRLSQYY GHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEALSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVL MLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHP YTERLIKYRTQLKRDYYD
Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9955963, Length=232, Percent_Identity=26.2931034482759, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=26.9565217391304, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI156105685, Length=217, Percent_Identity=28.110599078341, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI42741659, Length=227, Percent_Identity=27.3127753303965, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI171184400, Length=231, Percent_Identity=27.7056277056277, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4505771, Length=221, Percent_Identity=26.6968325791855, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=221, Percent_Identity=26.6968325791855, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=221, Percent_Identity=26.6968325791855, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787759, Length=255, Percent_Identity=30.9803921568627, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787548, Length=260, Percent_Identity=30.3846153846154, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789963, Length=263, Percent_Identity=27.3764258555133, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=32.156862745098, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=28.3018867924528, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1789890, Length=246, Percent_Identity=28.8617886178862, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI48994883, Length=249, Percent_Identity=29.3172690763052, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=31.5789473684211, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=30.9859154929577, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=28.4584980237154, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790544, Length=260, Percent_Identity=28.8461538461538, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789962, Length=247, Percent_Identity=28.3400809716599, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1786398, Length=249, Percent_Identity=28.5140562248996, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=27.6150627615063, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=231, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081791, Length=241, Percent_Identity=28.6307053941909, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=28.7037037037037, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788761, Length=256, Percent_Identity=28.125, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787547, Length=227, Percent_Identity=27.7533039647577, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=247, Percent_Identity=27.1255060728745, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=24.1228070175439, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI48994997, Length=249, Percent_Identity=24.8995983935743, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1787112, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786803, Length=218, Percent_Identity=27.9816513761468, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=27.1551724137931, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=23.8095238095238, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=26.3598326359833, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786872, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=28.695652173913, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=28.7037037037037, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789032, Length=222, Percent_Identity=25.6756756756757, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1786319, Length=210, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788644, Length=132, Percent_Identity=31.0606060606061, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787113, Length=236, Percent_Identity=27.9661016949153, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787143, Length=227, Percent_Identity=26.431718061674, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=25, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081834, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1789593, Length=227, Percent_Identity=23.3480176211454, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787370, Length=215, Percent_Identity=27.4418604651163, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=25.4807692307692, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=22.4669603524229, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=24.2290748898678, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211017, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193211015, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71996809, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115533592, Length=216, Percent_Identity=30.5555555555556, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71992285, Length=234, Percent_Identity=28.2051282051282, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=25.8474576271186, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=27.2340425531915, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25146777, Length=217, Percent_Identity=29.4930875576037, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17558664, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=244, Percent_Identity=27.0491803278689, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17567265, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193208177, Length=216, Percent_Identity=26.8518518518519, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71996550, Length=226, Percent_Identity=27.8761061946903, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=26.027397260274, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=244, Percent_Identity=25.8196721311475, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=199, Percent_Identity=24.6231155778894, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI23397593, Length=241, Percent_Identity=27.3858921161826, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI21357907, Length=231, Percent_Identity=25.1082251082251, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85726357, Length=226, Percent_Identity=25.6637168141593, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17136662, Length=235, Percent_Identity=24.2553191489362, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI85724858, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI85724856, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580547, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580551, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580549, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580545, Length=228, Percent_Identity=29.3859649122807, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574744, Length=223, Percent_Identity=26.0089686098655, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI161076684, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581617, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581615, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=25.7009345794392, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=25.7009345794392, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI161076682, Length=234, Percent_Identity=27.3504273504274, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29680; Mature: 29680
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLS CCCEEECCCCEECCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEE CTYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEA ECCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALN HHHHHHHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHHCCC GNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHP CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEHHCCH YTERLIKYRTQLKRDYYD HHHHHHHHHHHHHHCCCC >Mature Secondary Structure MMSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLS CCCEEECCCCEECCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEE CTYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEA ECCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALN HHHHHHHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHHCCC GNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHP CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEHHCCH YTERLIKYRTQLKRDYYD HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA