| Definition | Staphylococcus aureus subsp. aureus USA300_TCH1516 chromosome, complete genome. |
|---|---|
| Accession | NC_010079 |
| Length | 2,872,915 |
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The map label for this gene is oppF2
Identifier: 161509545
GI number: 161509545
Start: 1415634
End: 1416335
Strand: Reverse
Name: oppF2
Synonym: USA300HOU_1313
Alternate gene names: 161509545
Gene position: 1416335-1415634 (Counterclockwise)
Preceding gene: 161509546
Following gene: 161509544
Centisome position: 49.3
GC content: 33.05
Gene sequence:
>702_bases ATGATTGAGTTAAAACATGTGACTTTTGGTTATAATAAAAAGCAGATGGTGCTACAAGATATCAATATTACTATACCTGA TGGAGAAAATGTTGGTATTTTAGGCGAAAGTGGCTGTGGTAAAAGTACGCTCGCTTCATTGGTTCTTGGCTTGTTTAAAC CTGTTAAAGGAGAGATTTACTTAAGTGACAATGCTGTGTTACCGATTTTCCAACACCCTTTAACTAGCTTTAACCCTGAT TGGACGATTGAGACCTCATTAAAAGAAGCGTTATATTATTACAGAGGTCTAACTGATAATACTGCTCAGGATCAATTATT ATTACAACATTTATCTACTTTTGAGTTAAACGCGCAATTATTGACTAAATTACCAAGCGAAGTGAGTGGCGGACAATTAC AAAGATTTAATGTCATGCGTTCGTTATTAGCACAGCCTCGCGTTTTAATATGTGATGAGATAACTTCAAATTTAGATGTT ATAGCTGAACAAAATGTAATCAATATATTAAAAGCGCAAACGATTACGAACTTAAATCATTTTATCGTTATTTCTCATGA TTTATCCGTGTTACAACGCTTAGTTAATAGAATTATCGTTCTTAAGGATGGCATGATAGTCGATGATTTTGCAATAGAGG AATTATTTAATGTTGATAGACACCCTTATACAAAAGAATTAGTGCAAGCATTTTCATATTAG
Upstream 100 bases:
>100_bases ATCATTGAACGAGGTAATATTAATCATTTCAAGTATGAGCATTTGCATCCGTATACTGAACGTCTAATTAAATATAGAAC ACAATTAAAGAGGGATTACT
Downstream 100 bases:
>100_bases TTATTTAAGAATGCGATAATTCTAGACTTGTTATAAAATATAGATAAATCAAGTATTTTAATCTAGACACTTATCTATTT TATTTTCTTTATTTAAAAAT
Product: oligopeptide ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD WTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDV IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
Sequences:
>Translated_233_residues MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD WTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDV IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY >Mature_233_residues MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD WTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDV IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain
Homologues:
Organism=Homo sapiens, GI9961252, Length=242, Percent_Identity=30.1652892561983, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI9961250, Length=242, Percent_Identity=30.1652892561983, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4505771, Length=242, Percent_Identity=30.1652892561983, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI156105685, Length=239, Percent_Identity=28.8702928870293, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI42490749, Length=218, Percent_Identity=27.5229357798165, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI42741659, Length=234, Percent_Identity=29.4871794871795, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27436953, Length=225, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI66529005, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI153792144, Length=224, Percent_Identity=24.1071428571429, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787758, Length=237, Percent_Identity=31.2236286919831, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=32.7272727272727, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=32.8767123287671, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=31.3725490196078, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=30.0411522633745, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1789890, Length=245, Percent_Identity=29.7959183673469, Blast_Score=112, Evalue=1e-26, Organism=Escherichia coli, GI1787759, Length=253, Percent_Identity=27.6679841897233, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1789963, Length=235, Percent_Identity=30.2127659574468, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI145693107, Length=249, Percent_Identity=26.1044176706827, Blast_Score=103, Evalue=7e-24, Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=28.0172413793103, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=26.0683760683761, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=28.0851063829787, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1786398, Length=249, Percent_Identity=25.7028112449799, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=28.3400809716599, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=27.5, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=241, Percent_Identity=31.1203319502075, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=28.125, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=27.4418604651163, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=28.7037037037037, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787548, Length=237, Percent_Identity=24.8945147679325, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=27.1111111111111, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=26.7543859649123, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787712, Length=243, Percent_Identity=28.3950617283951, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=27.3913043478261, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=27.4418604651163, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786654, Length=227, Percent_Identity=28.6343612334802, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=25.9414225941423, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=25.6198347107438, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789751, Length=228, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=26.6949152542373, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786698, Length=155, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=28.75, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=229, Percent_Identity=24.8908296943231, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=27.5229357798165, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788165, Length=205, Percent_Identity=27.3170731707317, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787182, Length=204, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788644, Length=178, Percent_Identity=27.5280898876405, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787792, Length=217, Percent_Identity=24.4239631336406, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787041, Length=209, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=248, Percent_Identity=25, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI2367384, Length=211, Percent_Identity=25.1184834123223, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI212646699, Length=231, Percent_Identity=31.1688311688312, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=32.4561403508772, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=32.4561403508772, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=28.936170212766, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=26.1603375527426, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17567265, Length=237, Percent_Identity=29.535864978903, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=31.8777292576419, Blast_Score=84, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17511077, Length=255, Percent_Identity=28.2352941176471, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17569145, Length=226, Percent_Identity=27.8761061946903, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115535101, Length=250, Percent_Identity=29.6, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115533592, Length=260, Percent_Identity=27.6923076923077, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17558664, Length=233, Percent_Identity=29.1845493562232, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17551702, Length=245, Percent_Identity=29.7959183673469, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17569143, Length=232, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551700, Length=245, Percent_Identity=29.7959183673469, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565938, Length=244, Percent_Identity=30.327868852459, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17543740, Length=240, Percent_Identity=30.4166666666667, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71984940, Length=220, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71996550, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=221, Percent_Identity=27.1493212669683, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541710, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=235, Percent_Identity=30.2127659574468, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6321121, Length=215, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323959, Length=230, Percent_Identity=28.2608695652174, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322640, Length=244, Percent_Identity=28.6885245901639, Blast_Score=75, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6320339, Length=209, Percent_Identity=29.1866028708134, Blast_Score=66, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321081, Length=227, Percent_Identity=26.431718061674, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI24641565, Length=243, Percent_Identity=32.0987654320988, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI23397593, Length=253, Percent_Identity=29.6442687747036, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI17136662, Length=243, Percent_Identity=27.1604938271605, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21357907, Length=225, Percent_Identity=29.3333333333333, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI85726357, Length=247, Percent_Identity=27.9352226720648, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI281363262, Length=239, Percent_Identity=28.8702928870293, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24653245, Length=236, Percent_Identity=28.8135593220339, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=25.7009345794392, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=29.3333333333333, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=25.7009345794392, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI45551501, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI45551502, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357851, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI85725262, Length=197, Percent_Identity=27.9187817258883, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666836, Length=203, Percent_Identity=25.615763546798, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): OPPF2_STAA3 (Q2FH58)
Other databases:
- EMBL: CP000255 - RefSeq: YP_493970.1 - ProteinModelPortal: Q2FH58 - SMR: Q2FH58 - STRING: Q2FH58 - EnsemblBacteria: EBSTAT00000036361 - GeneID: 3915354 - GenomeReviews: CP000255_GR - KEGG: saa:SAUSA300_1273 - eggNOG: COG4608 - GeneTree: EBGT00050000023778 - HOGENOM: HBG758042 - OMA: LNPQTRY - ProtClustDB: CLSK885308 - InterPro: IPR003439 - InterPro: IPR003593 - SMART: SM00382
Pfam domain/function: PF00005 ABC_tran
EC number: NA
Molecular weight: Translated: 26258; Mature: 26258
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY CEEEEEEEECCCCCCEEEEECEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL ECCCEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCE FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY EEEEECCHHHHHHHHHHHEEEECCEEEHHHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY CEEEEEEEECCCCCCEEEEECEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL ECCCEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCE FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY EEEEECCHHHHHHHHHHHEEEECCEEEHHHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA