Click here to switch to the map view.

The map label for this gene is rbsB [H]

Identifier: 160902388

GI number: 160902388

Start: 976773

End: 977642

Strand: Direct

Name: rbsB [H]

Synonym: Pmob_0923

Alternate gene names: 160902388

Gene position: 976773-977642 (Clockwise)

Preceding gene: 160902387

Following gene: 160902389

Centisome position: 45.02

GC content: 39.77

Gene sequence:

>870_bases
ATGAGAAAGGTATTAGTATTTGTATTGTTAGTGTTGTTTGTTTCAACGTTTAGTTTTGGAGTAAAGATAGGTTTATCGGT
TTCAACATTGAACAACCCATTTTTTGTTGACTTAGCAAACGGTGCTGAAGATAAAGCAAATGAATTAGGGGTAGAACTGT
TGGTAGTTGATGCCCGAGACGATCCAGCAAAACAACTAAACGACATAGAAGATCTGATATTACAGAGAGTCGACATGATT
TTAGTAAATCCCACGGACAGCGACGCTATTGTATCAGCTATTGAAGAAGCAAACGATGCTAAAATCCCAGTAATAACTGT
TGATAGAAGTGCCAATGGTGGAAAAGTTTTGCTCCATATAGCTTCAGACAACGTTGCTGGAGGAATGATGGCAGGTAGTT
TTATTGCTGAACAATTAGGAGGAGAAGGAAAGGTTATAGAATTGGTCGGAGTTCCTGGAACTTCTTCTGCAAGAGAAAGA
GGTCAAGGTTTCAACGAAGAAATATCGAAATATCCTGGTATTGAAGTAGTAGCCAGACAAACAGCAAACTACAACAGGGC
TGAAGGGCTAACCGTTATGGAAAACCTACTTCAGGCCTATCCTGATGTAGACGCCGTTTTTGCTCATAACGATGAAATGG
CTTTAGGTGCATTGGAAGCAATAAAGGCTGCTGGGAAATTACAAGATATAATCGTTGTTGGGTTTGATGCCACTCCCGAT
GCATTAGCTTCTGTTGAAAGTGGTGAACTTAGTGCAACAATAGCTCAACAACCTTACACAATGGGGGAACTGGCAGTTGA
AAAAGCTTATGAATATTTGACCACAGAGACAATTTACTTCCCCGTTCCACTTCAATTGGTAACAAAATAA

Upstream 100 bases:

>100_bases
ACATTTTTCGATAGGCGAAGGGATAATGCTTTCCCTTTCCTTTTGGGTGGGGAGCGGGGGAAGGGCGCTGAGAAAAACAT
ATCAAAGGAGGTAGAGAAAG

Downstream 100 bases:

>100_bases
CTTAAAAAGGGGCTTTATGCCCCTTTTACTGAAACTATCCAAAGGAGAGATAACCTCATGATCGCTGTAATTGGTAGCAG
TAACATGGATATTGTATTCA

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRKVLVFVLLVLFVSTFSFGVKIGLSVSTLNNPFFVDLANGAEDKANELGVELLVVDARDDPAKQLNDIEDLILQRVDMI
LVNPTDSDAIVSAIEEANDAKIPVITVDRSANGGKVLLHIASDNVAGGMMAGSFIAEQLGGEGKVIELVGVPGTSSARER
GQGFNEEISKYPGIEVVARQTANYNRAEGLTVMENLLQAYPDVDAVFAHNDEMALGALEAIKAAGKLQDIIVVGFDATPD
ALASVESGELSATIAQQPYTMGELAVEKAYEYLTTETIYFPVPLQLVTK

Sequences:

>Translated_289_residues
MRKVLVFVLLVLFVSTFSFGVKIGLSVSTLNNPFFVDLANGAEDKANELGVELLVVDARDDPAKQLNDIEDLILQRVDMI
LVNPTDSDAIVSAIEEANDAKIPVITVDRSANGGKVLLHIASDNVAGGMMAGSFIAEQLGGEGKVIELVGVPGTSSARER
GQGFNEEISKYPGIEVVARQTANYNRAEGLTVMENLLQAYPDVDAVFAHNDEMALGALEAIKAAGKLQDIIVVGFDATPD
ALASVESGELSATIAQQPYTMGELAVEKAYEYLTTETIYFPVPLQLVTK
>Mature_289_residues
MRKVLVFVLLVLFVSTFSFGVKIGLSVSTLNNPFFVDLANGAEDKANELGVELLVVDARDDPAKQLNDIEDLILQRVDMI
LVNPTDSDAIVSAIEEANDAKIPVITVDRSANGGKVLLHIASDNVAGGMMAGSFIAEQLGGEGKVIELVGVPGTSSARER
GQGFNEEISKYPGIEVVARQTANYNRAEGLTVMENLLQAYPDVDAVFAHNDEMALGALEAIKAAGKLQDIIVVGFDATPD
ALASVESGELSATIAQQPYTMGELAVEKAYEYLTTETIYFPVPLQLVTK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=295, Percent_Identity=50.1694915254237, Blast_Score=279, Evalue=2e-76,
Organism=Escherichia coli, GI1790526, Length=276, Percent_Identity=34.0579710144928, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1790674, Length=261, Percent_Identity=30.6513409961686, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788473, Length=278, Percent_Identity=27.3381294964029, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790194, Length=263, Percent_Identity=26.9961977186312, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789990, Length=264, Percent_Identity=26.1363636363636, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788898, Length=272, Percent_Identity=22.7941176470588, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30846; Mature: 30846

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVLVFVLLVLFVSTFSFGVKIGLSVSTLNNPFFVDLANGAEDKANELGVELLVVDARD
CHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCCCCCHHHHCCEEEEEEECCC
DPAKQLNDIEDLILQRVDMILVNPTDSDAIVSAIEEANDAKIPVITVDRSANGGKVLLHI
CHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEE
ASDNVAGGMMAGSFIAEQLGGEGKVIELVGVPGTSSARERGQGFNEEISKYPGIEVVARQ
ECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHCCCCEEEEEC
TANYNRAEGLTVMENLLQAYPDVDAVFAHNDEMALGALEAIKAAGKLQDIIVVGFDATPD
CCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCH
ALASVESGELSATIAQQPYTMGELAVEKAYEYLTTETIYFPVPLQLVTK
HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCEEECC
>Mature Secondary Structure
MRKVLVFVLLVLFVSTFSFGVKIGLSVSTLNNPFFVDLANGAEDKANELGVELLVVDARD
CHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCCCCCHHHHCCEEEEEEECCC
DPAKQLNDIEDLILQRVDMILVNPTDSDAIVSAIEEANDAKIPVITVDRSANGGKVLLHI
CHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEE
ASDNVAGGMMAGSFIAEQLGGEGKVIELVGVPGTSSARERGQGFNEEISKYPGIEVVARQ
ECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHCCCCEEEEEC
TANYNRAEGLTVMENLLQAYPDVDAVFAHNDEMALGALEAIKAAGKLQDIIVVGFDATPD
CCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCH
ALASVESGELSATIAQQPYTMGELAVEKAYEYLTTETIYFPVPLQLVTK
HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]