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The map label for this gene is rbsD

Identifier: 160902385

GI number: 160902385

Start: 973869

End: 974264

Strand: Direct

Name: rbsD

Synonym: Pmob_0920

Alternate gene names: 160902385

Gene position: 973869-974264 (Clockwise)

Preceding gene: 160902384

Following gene: 160902386

Centisome position: 44.89

GC content: 28.54

Gene sequence:

>396_bases
TTGAAAAAGCAAGGCATATTTAATTCTCAGATATCATATTTTGTTGCATCGATGGGGCATAAAGATATGTTAAGTATAGT
TGACATGGGTTATCCAATACCAAAAGATGCCACATTTGTTGACTTGGTTTTTGATAAAGGTATACCAAATTTTATCGATA
CCATAAAAATGGTTTTATACGAATTAGAAGTTGAGAAAGTTATTATCGCTGGTGAGATGGAAGTAAATAATCTTAAAAAT
TATCAAAAAGTGATCGATATATTTTCAAATATTGAGATAGAGAAAAAATCACATGAAGAGTTTAAAGATATAGCAAAAAA
TTCCAAATTTTTTATAAGAACTGGAGAATGTACCCCCTTTTCAAACATTATATTGGTTTCAGGGGTGATTTTTTAA

Upstream 100 bases:

>100_bases
ATGATCTTTACAATACTTTCAAAAAAAATCGATCACATTCCTGTGAAACAGTTTGAGAACGAGATAATAATTCGAGAAAG
TACGAGGGGGAGAAACTAAT

Downstream 100 bases:

>100_bases
TGTTATTAGAGATGGTAGATATTACCAAAACCTTTCCAGGGGTTTTAGCCCTTGACAAAGTCAGTTTCAATTTAAAAGAA
AAAGAAATACACGCCTTACT

Product: RbsD or FucU transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKQGIFNSQISYFVASMGHKDMLSIVDMGYPIPKDATFVDLVFDKGIPNFIDTIKMVLYELEVEKVIIAGEMEVNNLKN
YQKVIDIFSNIEIEKKSHEEFKDIAKNSKFFIRTGECTPFSNIILVSGVIF

Sequences:

>Translated_131_residues
MKKQGIFNSQISYFVASMGHKDMLSIVDMGYPIPKDATFVDLVFDKGIPNFIDTIKMVLYELEVEKVIIAGEMEVNNLKN
YQKVIDIFSNIEIEKKSHEEFKDIAKNSKFFIRTGECTPFSNIILVSGVIF
>Mature_131_residues
MKKQGIFNSQISYFVASMGHKDMLSIVDMGYPIPKDATFVDLVFDKGIPNFIDTIKMVLYELEVEKVIIAGEMEVNNLKN
YQKVIDIFSNIEIEKKSHEEFKDIAKNSKFFIRTGECTPFSNIILVSGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=37.410071942446, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PETMO (A9BJQ0)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001567966.1
- ProteinModelPortal:   A9BJQ0
- SMR:   A9BJQ0
- GeneID:   5756906
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_0920
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- BioCyc:   PMOB403833:PMOB_0920-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14981; Mature: 14981

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQGIFNSQISYFVASMGHKDMLSIVDMGYPIPKDATFVDLVFDKGIPNFIDTIKMVLY
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
ELEVEKVIIAGEMEVNNLKNYQKVIDIFSNIEIEKKSHEEFKDIAKNSKFFIRTGECTPF
HHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
SNIILVSGVIF
CCCCEECEECC
>Mature Secondary Structure
MKKQGIFNSQISYFVASMGHKDMLSIVDMGYPIPKDATFVDLVFDKGIPNFIDTIKMVLY
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
ELEVEKVIIAGEMEVNNLKNYQKVIDIFSNIEIEKKSHEEFKDIAKNSKFFIRTGECTPF
HHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
SNIILVSGVIF
CCCCEECEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA