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The map label for this gene is rimM

Identifier: 160901806

GI number: 160901806

Start: 345978

End: 346535

Strand: Direct

Name: rimM

Synonym: Pmob_0322

Alternate gene names: 160901806

Gene position: 345978-346535 (Clockwise)

Preceding gene: 160901805

Following gene: 160901807

Centisome position: 15.95

GC content: 31.0

Gene sequence:

>558_bases
TTGAACAGTTTATCCAATCTTTTGGACAACAAAATCTCTGTGGCAAAAATTGTTAATAGCCATGGAGTGCACGGAGAAGT
AAAAATAGTACCTTTTACCAACGTAAAAGATGTGATAACGAACTTAGAAGAAGTTCTTTTATACAACACCTCAACCAGAA
ATTTCTTCTTTAGTAAGGTACTACAAGTTAAACCATTAAATAAATTTTTTGTATTGAACTTACGTGGAATAAAGGATATG
GACGAAGCTAAAAAAATGATAGGGTATGAAGTTTTTATCGATAAGAAAGATCTTCCTTCTCTTAATAGTGAGGAATATTA
CTGGTATGAGATTTTAGATTCTGAGGTGTACTATGAAGATGGGGAATACGTTGGAAAAGTAGAAGAAATAATTCAAACAG
GTGCAAACGACGTTATTTCTATAAAAAACCTTGAAGATGATAAAGAAGTTCTCATACCAATGACAGATCATTACATTATT
GAGTTAAAAAAAGAGGATAAAAGTATTATAGTAAAAAAGATAGAGTGGTACGAAAATGGAACAAATCAAGCGGATTAA

Upstream 100 bases:

>100_bases
GAAAAGACGGTAGAACTATTAAATCCATAAACATTCTTTTAAACGCAGCAAAAAAAGATCCTGATAAGAAATTTATCTTA
AAAGTAATTAGGTGAGTGAA

Downstream 100 bases:

>100_bases
AATTAGTGTTTTGACTATTTTCCCTGGTATGTTTGATATAATCAGAAACTATGGAGTAATCAAAAAAGCTATAGAAAAAA
AATTAGTTGAAATAGATATA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNSLSNLLDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLNKFFVLNLRGIKDM
DEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDGEYVGKVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYII
ELKKEDKSIIVKKIEWYENGTNQAD

Sequences:

>Translated_185_residues
MNSLSNLLDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLNKFFVLNLRGIKDM
DEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDGEYVGKVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYII
ELKKEDKSIIVKKIEWYENGTNQAD
>Mature_185_residues
MNSLSNLLDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLNKFFVLNLRGIKDM
DEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDGEYVGKVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYII
ELKKEDKSIIVKKIEWYENGTNQAD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=28.4916201117318, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PETMO (A9BF00)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001567387.1
- ProteinModelPortal:   A9BF00
- SMR:   A9BF00
- GeneID:   5757784
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_0322
- HOGENOM:   HBG703775
- OMA:   IASHRKH
- ProtClustDB:   CLSK875840
- BioCyc:   PMOB403833:PMOB_0322-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21452; Mature: 21452

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLSNLLDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKV
CCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHEEECCCCCHHHHHHH
LQVKPLNKFFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYED
HEECCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEEECCEEEECC
GEYVGKVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYIIELKKEDKSIIVKKIEWYENG
CCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCEEEEEEECCCCEEEEEEEEECCCC
TNQAD
CCCCC
>Mature Secondary Structure
MNSLSNLLDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKV
CCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHEEECCCCCHHHHHHH
LQVKPLNKFFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYED
HEECCCCEEEEEEECCCCCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEEECCEEEECC
GEYVGKVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYIIELKKEDKSIIVKKIEWYENG
CCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCEEEEEEECCCCEEEEEEEEECCCC
TNQAD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA