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The map label for this gene is ycjO [C]

Identifier: 160901790

GI number: 160901790

Start: 328528

End: 329412

Strand: Direct

Name: ycjO [C]

Synonym: Pmob_0306

Alternate gene names: 160901790

Gene position: 328528-329412 (Clockwise)

Preceding gene: 160901789

Following gene: 160901791

Centisome position: 15.14

GC content: 32.77

Gene sequence:

>885_bases
TTGCAACCGAAGATCAAATTAAATAATTTAGGATATGTTTTACCCACACTTATTTTCATAATATCGATCTTTTTGATTCC
TATTGTATATACTGTAGTCATTTCTTTCTTTAATTGGAATCTTTTAAGACCGGATTTAGGAGTAAGGTTTGTAGGTTTAC
AAAATTATATAAGAGCTTTTAGAGACTCTTTTACCTGGGAGACAATGGGAAGAACTTTCTACTTTGTTATAGTTTCAGTT
CTATTGGAACTAATATTTGGTTTTATAATAGCTCTTTCGCTAAATACAGAATTTAAAGGTTGGAAAGTTGTTCAATCGAT
AATTTTAATTCCTTTCATGATTGCTCCAGTTGTAGTCGGATTCGTGTGGAAATTTATTTTAAATCCTGATTACGGTCCTT
TACCACAACTTTTAATGAACATAGGATTTGGTTCAATAGCAGAAAATCCATTGTTAGCAAATCCAAACTCTGCCATGTTC
ATGGTCATATTAGCGGATGTTTGGGAATATACCCCTTTTGTTACTTTAGTTTTATTGGCTGGTTTAAAAGCTTTGCCACA
AGAACCATATGAAGCCGCATATGTGGATGGAGCTTCAGCTATTCAAAGATTTTTTTATATAACTCTACCTTTACTACGAC
CCTCAATCATGGTTGCTATTGTAATTAGGACGTTAACGTCTTTAAGAGTATTTGACACCATTTTTATCATGACGGGTGGT
GGACCAGGTTCTGCTACAGAAACACTTTCTTTTTATGGCTATAGAACTGCATTTCAATCATACCAAATGGGATATTCGTC
AGCGATTAATCTGATTTCATTTTTCTTAGCAATTGTTTTTACTTTAGTCTATATGAAAATATTAGGGTGGGATAATAATG
AGTAA

Upstream 100 bases:

>100_bases
CTGCTGATGGTGTTTTCCAACTATTGAAAGACCATGGTTATTATTGAATCCAAGAAAGCCCCGTTAAAACGGGGCTTTAC
TCCAAAGGAGGTTTTGTTGA

Downstream 100 bases:

>100_bases
AAGTAAAATTATAAAAGTATTGTCATTGACAATAGTAGTTATAGCGTTAATTTGGACGCTTTATCCCCTTATGTGGATTC
TTTTTTCATCCTTTAAAACA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQPKIKLNNLGYVLPTLIFIISIFLIPIVYTVVISFFNWNLLRPDLGVRFVGLQNYIRAFRDSFTWETMGRTFYFVIVSV
LLELIFGFIIALSLNTEFKGWKVVQSIILIPFMIAPVVVGFVWKFILNPDYGPLPQLLMNIGFGSIAENPLLANPNSAMF
MVILADVWEYTPFVTLVLLAGLKALPQEPYEAAYVDGASAIQRFFYITLPLLRPSIMVAIVIRTLTSLRVFDTIFIMTGG
GPGSATETLSFYGYRTAFQSYQMGYSSAINLISFFLAIVFTLVYMKILGWDNNE

Sequences:

>Translated_294_residues
MQPKIKLNNLGYVLPTLIFIISIFLIPIVYTVVISFFNWNLLRPDLGVRFVGLQNYIRAFRDSFTWETMGRTFYFVIVSV
LLELIFGFIIALSLNTEFKGWKVVQSIILIPFMIAPVVVGFVWKFILNPDYGPLPQLLMNIGFGSIAENPLLANPNSAMF
MVILADVWEYTPFVTLVLLAGLKALPQEPYEAAYVDGASAIQRFFYITLPLLRPSIMVAIVIRTLTSLRVFDTIFIMTGG
GPGSATETLSFYGYRTAFQSYQMGYSSAINLISFFLAIVFTLVYMKILGWDNNE
>Mature_294_residues
MQPKIKLNNLGYVLPTLIFIISIFLIPIVYTVVISFFNWNLLRPDLGVRFVGLQNYIRAFRDSFTWETMGRTFYFVIVSV
LLELIFGFIIALSLNTEFKGWKVVQSIILIPFMIAPVVVGFVWKFILNPDYGPLPQLLMNIGFGSIAENPLLANPNSAMF
MVILADVWEYTPFVTLVLLAGLKALPQEPYEAAYVDGASAIQRFFYITLPLLRPSIMVAIVIRTLTSLRVFDTIFIMTGG
GPGSATETLSFYGYRTAFQSYQMGYSSAINLISFFLAIVFTLVYMKILGWDNNE

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=269, Percent_Identity=28.2527881040892, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789861, Length=243, Percent_Identity=31.6872427983539, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1790465, Length=280, Percent_Identity=26.4285714285714, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33255; Mature: 33255

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKIKLNNLGYVLPTLIFIISIFLIPIVYTVVISFFNWNLLRPDLGVRFVGLQNYIRAF
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHH
RDSFTWETMGRTFYFVIVSVLLELIFGFIIALSLNTEFKGWKVVQSIILIPFMIAPVVVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVWKFILNPDYGPLPQLLMNIGFGSIAENPLLANPNSAMFMVILADVWEYTPFVTLVLLA
HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GLKALPQEPYEAAYVDGASAIQRFFYITLPLLRPSIMVAIVIRTLTSLRVFDTIFIMTGG
HHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
GPGSATETLSFYGYRTAFQSYQMGYSSAINLISFFLAIVFTLVYMKILGWDNNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQPKIKLNNLGYVLPTLIFIISIFLIPIVYTVVISFFNWNLLRPDLGVRFVGLQNYIRAF
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHH
RDSFTWETMGRTFYFVIVSVLLELIFGFIIALSLNTEFKGWKVVQSIILIPFMIAPVVVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVWKFILNPDYGPLPQLLMNIGFGSIAENPLLANPNSAMFMVILADVWEYTPFVTLVLLA
HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GLKALPQEPYEAAYVDGASAIQRFFYITLPLLRPSIMVAIVIRTLTSLRVFDTIFIMTGG
HHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
GPGSATETLSFYGYRTAFQSYQMGYSSAINLISFFLAIVFTLVYMKILGWDNNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]