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The map label for this gene is ycjP [C]

Identifier: 160901791

GI number: 160901791

Start: 329405

End: 330229

Strand: Direct

Name: ycjP [C]

Synonym: Pmob_0307

Alternate gene names: 160901791

Gene position: 329405-330229 (Clockwise)

Preceding gene: 160901790

Following gene: 160901794

Centisome position: 15.18

GC content: 35.88

Gene sequence:

>825_bases
ATGAGTAAAAGTAAAATTATAAAAGTATTGTCATTGACAATAGTAGTTATAGCGTTAATTTGGACGCTTTATCCCCTTAT
GTGGATTCTTTTTTCATCCTTTAAAACACCTATTGATCAGTTCACAATTCCACCAAAATGGATCCCAGAAAATTTCACTT
TAAGAAATTATAAGATTTTTTTTAGCAACACGGAATTCGTAAGAGCCTTCTTCAATAGTATTATAGTTACCGCCTCCTCC
ACTATTTTAGCTCTAATTCTTGGTATACCAGCAGCTTATGGATTGGCTCGTTTTAAATGGAAACATGCAAGTCTATTGTC
ATTTATTATACTGTTAGCACGTATGACTCCACCGATTGTTATGGTGTTACCTTTTTTCTTAATTTCTCGCATTCTAAATC
TATCAGGAACATACATCCCTATTATCATTGCTAGTTCTTTTTTCAGCGTACCTTTTGCGGTGTGGATGATGCAAGGCTTT
TTTTCTGAAATTCCTGAATCACTAGAGGAAGCTGCTATGATAGATGGGTGTACAAGATTTGAATCGTTGAGAAAAATAGT
TCTTCCTTTAGTATTACCAGGAATTTCGGCAACTTCGATATTATGTGCACTCGTATCATGGAATGAATTTTTATTCGCCT
TAATTTTAACTGGTCAGGAGACCCGAACACTGCCAGTACTTGTGAATATGTTTGTAAGTGAAAAGAATGTTGATTGGGGG
GTAATGAGCGCTGCTGCGTTGATCACTGTTATACCCATGATAATCTTCGGACTACTCGTTCAAAACAATTTGGTTAGAGG
GTTAACTGCAGGAAGTGGAAAATAG

Upstream 100 bases:

>100_bases
TCATACCAAATGGGATATTCGTCAGCGATTAATCTGATTTCATTTTTCTTAGCAATTGTTTTTACTTTAGTCTATATGAA
AATATTAGGGTGGGATAATA

Downstream 100 bases:

>100_bases
GTGTTTTTATCCCCCCTCAGATCCCCTTTCTTATGTTCAGTTCACTAAAAACTCATCTTTTAACCATCAAAGTAAGGAAT
TTGCCTACTGGATAGGGGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIFFSNTEFVRAFFNSIIVTASS
TILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIVMVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGF
FSEIPESLEEAAMIDGCTRFESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWG
VMSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK

Sequences:

>Translated_274_residues
MSKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIFFSNTEFVRAFFNSIIVTASS
TILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIVMVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGF
FSEIPESLEEAAMIDGCTRFESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWG
VMSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK
>Mature_273_residues
SKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIFFSNTEFVRAFFNSIIVTASST
ILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIVMVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGFF
SEIPESLEEAAMIDGCTRFESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWGV
MSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=259, Percent_Identity=35.1351351351351, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790464, Length=214, Percent_Identity=33.1775700934579, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789860, Length=277, Percent_Identity=23.826714801444, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787368, Length=177, Percent_Identity=24.2937853107345, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30580; Mature: 30449

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEEEE
FSNTEFVRAFFNSIIVTASSTILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIV
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
MVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGFFSEIPESLEEAAMIDGCTRF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHH
VMSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEEEE
FSNTEFVRAFFNSIIVTASSTILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIV
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
MVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGFFSEIPESLEEAAMIDGCTRF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHH
VMSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]