Definition | Petrotoga mobilis SJ95 chromosome, complete genome. |
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Accession | NC_010003 |
Length | 2,169,548 |
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The map label for this gene is 160901789
Identifier: 160901789
GI number: 160901789
Start: 327188
End: 328474
Strand: Direct
Name: 160901789
Synonym: Pmob_0305
Alternate gene names: NA
Gene position: 327188-328474 (Clockwise)
Preceding gene: 160901788
Following gene: 160901790
Centisome position: 15.08
GC content: 37.68
Gene sequence:
>1287_bases GTGCGGAAAGGTAGAGTATTAGTTATTCTTTTTGTTTTTTTATTAGTTTTTGCAAATATGTTTTCAGAAGTGAATTTAGT GAGTGAAGTAGGTATACACACTGAGGCGTGGAAAACGGTTATGGATGATTTTCAAAAAGAAACAGGGATAAAGGCAACTA TCCAGCAATTCCCTTATGCAAATTATTTCGATCAGCTGATGTTAACCTTTACCTCTGGAAGAGTCGATTTTGATGTACCT TATGTTTCAATGCTTTGGTATCCTGCTTTAGCTACTGCTGGATATATATACCCCATAAACAAAATCGCTGGATACGAGGA GTTAAATTTAGAAGATATTTCTGGTATCGAAAACGCCTGGCAAAATGGAAATCTGTATTTCATACCGTATATGAATGAGT TGGGAGGTGTAGTTTACAGGACTGATTTGTTCAACGATCCTAAGGAGAAAGAGGCTTTTAAAGAAAAATACGGGTATGAA CTAACTCCACCCCAGACGTTGGAACAATATAAAGATATAGCAGAATTTTTCTATAGACCTCCAGAATTATACGGTGTAAC TCTCATGGGCCAAAGAAGTATATTCCTTGCCACTCATTTCATGCAAAGATTATGGGCAAGAGGTGGAAGCCTTTTAAATG ATGAAATGAAACCTGTTTTCAATTCCAAAGAAGGTATTGAAGCGTTGGAAGAAGTTGGTGAAATGTTTGAATTCGCAAAT CCTGCTGCAAAAACCTATGTATTCCAGGATGCTTTGACAGAATTTACACAAGGAAGAAGTGCTATGGCTGAACTATGGAC GACAGCTATGCTTTACACAGAAGATCCAGAAACTTCTAAAGTTGTCGGCAAATCATCCTTTGTTGGATTCCCAAGACCGG AAGAATTGAAAGATGAAAAATTACCAATGCTGTATATTTCATGGGGGTTTACTGTCAGCTCTGCAAGTAAGAATAAAGAA GAAGCCTTAGAATGGATAAAGTTTGTAACCGAAACCCAAAATGAAGTAAAAGCTGCTCCTTACGGTAACATTCCAGCGCG TTTTTCATCTATAAATGATCCAGCATTGAGAGAAAAATTTCCGTGGCTGGATGGCTTTTCTAAAGCAATGGAAAACTCTA TCCCAACACCTATGGTCCCACTCATTCCGGAAGGAAATTCTATAGTAAATGATTATATAGCCCCTGCTGTGTCTGAATAT CTAAGCGGTTCAAAAACAGCTGAAGAAGCTTTGAATGAAGCTGCTGATGGTGTTTTCCAACTATTGAAAGACCATGGTTA TTATTGA
Upstream 100 bases:
>100_bases AGAAGCATAATAAAGTCTTCAACAAGCAAAGCTATTGATATTACTTTAAGGGCAATTAAAGACTTGTACCAAAACGAACT TTAATTAGGAGGTGTTAAAA
Downstream 100 bases:
>100_bases ATCCAAGAAAGCCCCGTTAAAACGGGGCTTTACTCCAAAGGAGGTTTTGTTGATTGCAACCGAAGATCAAATTAAATAAT TTAGGATATGTTTTACCCAC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MRKGRVLVILFVFLLVFANMFSEVNLVSEVGIHTEAWKTVMDDFQKETGIKATIQQFPYANYFDQLMLTFTSGRVDFDVP YVSMLWYPALATAGYIYPINKIAGYEELNLEDISGIENAWQNGNLYFIPYMNELGGVVYRTDLFNDPKEKEAFKEKYGYE LTPPQTLEQYKDIAEFFYRPPELYGVTLMGQRSIFLATHFMQRLWARGGSLLNDEMKPVFNSKEGIEALEEVGEMFEFAN PAAKTYVFQDALTEFTQGRSAMAELWTTAMLYTEDPETSKVVGKSSFVGFPRPEELKDEKLPMLYISWGFTVSSASKNKE EALEWIKFVTETQNEVKAAPYGNIPARFSSINDPALREKFPWLDGFSKAMENSIPTPMVPLIPEGNSIVNDYIAPAVSEY LSGSKTAEEALNEAADGVFQLLKDHGYY
Sequences:
>Translated_428_residues MRKGRVLVILFVFLLVFANMFSEVNLVSEVGIHTEAWKTVMDDFQKETGIKATIQQFPYANYFDQLMLTFTSGRVDFDVP YVSMLWYPALATAGYIYPINKIAGYEELNLEDISGIENAWQNGNLYFIPYMNELGGVVYRTDLFNDPKEKEAFKEKYGYE LTPPQTLEQYKDIAEFFYRPPELYGVTLMGQRSIFLATHFMQRLWARGGSLLNDEMKPVFNSKEGIEALEEVGEMFEFAN PAAKTYVFQDALTEFTQGRSAMAELWTTAMLYTEDPETSKVVGKSSFVGFPRPEELKDEKLPMLYISWGFTVSSASKNKE EALEWIKFVTETQNEVKAAPYGNIPARFSSINDPALREKFPWLDGFSKAMENSIPTPMVPLIPEGNSIVNDYIAPAVSEY LSGSKTAEEALNEAADGVFQLLKDHGYY >Mature_428_residues MRKGRVLVILFVFLLVFANMFSEVNLVSEVGIHTEAWKTVMDDFQKETGIKATIQQFPYANYFDQLMLTFTSGRVDFDVP YVSMLWYPALATAGYIYPINKIAGYEELNLEDISGIENAWQNGNLYFIPYMNELGGVVYRTDLFNDPKEKEAFKEKYGYE LTPPQTLEQYKDIAEFFYRPPELYGVTLMGQRSIFLATHFMQRLWARGGSLLNDEMKPVFNSKEGIEALEEVGEMFEFAN PAAKTYVFQDALTEFTQGRSAMAELWTTAMLYTEDPETSKVVGKSSFVGFPRPEELKDEKLPMLYISWGFTVSSASKNKE EALEWIKFVTETQNEVKAAPYGNIPARFSSINDPALREKFPWLDGFSKAMENSIPTPMVPLIPEGNSIVNDYIAPAVSEY LSGSKTAEEALNEAADGVFQLLKDHGYY
Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 48685; Mature: 48685
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGRVLVILFVFLLVFANMFSEVNLVSEVGIHTEAWKTVMDDFQKETGIKATIQQFPYA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCH NYFDQLMLTFTSGRVDFDVPYVSMLWYPALATAGYIYPINKIAGYEELNLEDISGIENAW HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHHHHHHHHHC QNGNLYFIPYMNELGGVVYRTDLFNDPKEKEAFKEKYGYELTPPQTLEQYKDIAEFFYRP CCCCEEEEECHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC PELYGVTLMGQRSIFLATHFMQRLWARGGSLLNDEMKPVFNSKEGIEALEEVGEMFEFAN CHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC PAAKTYVFQDALTEFTQGRSAMAELWTTAMLYTEDPETSKVVGKSSFVGFPRPEELKDEK CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCHHHHCCCCCCCCCCCCHHCCCCC LPMLYISWGFTVSSASKNKEEALEWIKFVTETQNEVKAAPYGNIPARFSSINDPALREKF CCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHC PWLDGFSKAMENSIPTPMVPLIPEGNSIVNDYIAPAVSEYLSGSKTAEEALNEAADGVFQ CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LLKDHGYY HHHHCCCC >Mature Secondary Structure MRKGRVLVILFVFLLVFANMFSEVNLVSEVGIHTEAWKTVMDDFQKETGIKATIQQFPYA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCH NYFDQLMLTFTSGRVDFDVPYVSMLWYPALATAGYIYPINKIAGYEELNLEDISGIENAW HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHHHHHHHHHC QNGNLYFIPYMNELGGVVYRTDLFNDPKEKEAFKEKYGYELTPPQTLEQYKDIAEFFYRP CCCCEEEEECHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC PELYGVTLMGQRSIFLATHFMQRLWARGGSLLNDEMKPVFNSKEGIEALEEVGEMFEFAN CHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC PAAKTYVFQDALTEFTQGRSAMAELWTTAMLYTEDPETSKVVGKSSFVGFPRPEELKDEK CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCHHHHCCCCCCCCCCCCHHCCCCC LPMLYISWGFTVSSASKNKEEALEWIKFVTETQNEVKAAPYGNIPARFSSINDPALREKF CCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHC PWLDGFSKAMENSIPTPMVPLIPEGNSIVNDYIAPAVSEYLSGSKTAEEALNEAADGVFQ CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LLKDHGYY HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]