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The map label for this gene is udp [H]

Identifier: 160901788

GI number: 160901788

Start: 326383

End: 327171

Strand: Direct

Name: udp [H]

Synonym: Pmob_0304

Alternate gene names: 160901788

Gene position: 326383-327171 (Clockwise)

Preceding gene: 160901787

Following gene: 160901789

Centisome position: 15.04

GC content: 36.38

Gene sequence:

>789_bases
GTGTTTAAACAAGATTTTAGGGTTCCAACAGGATTAGAAAATCAAATTCAATACCATATTCAATGTGGGCCGGGTGACGT
TGCTCCTGTAGTGATTGTTCCCGGTGATCAAGGCAGAGTAGAAAGTATTATCAGTAAACTACACGATCCCAAAAAAGTTT
CAGAAAACAGAGGACTTATTACTTATACCGGTTATCATGAAGATTACCCTGTATCAGTCACTTCAACAGGAATGGGTGGG
CCTTCTGCAAGCATTGTCTACGAAGAGCTTATAAATATTGGGGCAAAGATACTGATTAGGATTGGAAGTGTTGCTGGATT
ACAAGAAGAAATTGAAGAAGGAGATGTCATAATTCCTCATGCTTGCGTGAGAGATGATGGAGCTAGTCAATATTATGTAC
CACAGAATTTCCCTGCGGTAGCTTCACCAGAAGTATATTTAAGACTTATTTCTGCAGCAAAAAGTCTAAATCTTGATTTC
AAAACAGGAATAAATTGGAGTCATTCTTGTTTTTACAATAGGGATCCTGAATATTTTCAAAGATGGAGTAGATACAGAGT
TGTTTCTATGGATATGGAAGCTTCTTCTCTTTTCGTTGTCTCAGCGTTAAGAGGGGTAAAAGCTGGATTTATTGGAATAT
GTTATGCAAATAGGTTCAAACAATCCAATAAAGACAAAGTAGATCTAAGCGTTCCAGATACTAATAGAAGCATAATAAAG
TCTTCAACAAGCAAAGCTATTGATATTACTTTAAGGGCAATTAAAGACTTGTACCAAAACGAACTTTAA

Upstream 100 bases:

>100_bases
CCTTACTTCACTCATTGGATTACATAAATACCTCTATTTTCAAATTGAGTGTATTCAGAAGAAAAATATAACGTATTTAA
AACTACAAGGAGGAGATTCT

Downstream 100 bases:

>100_bases
TTAGGAGGTGTTAAAAGTGCGGAAAGGTAGAGTATTAGTTATTCTTTTTGTTTTTTTATTAGTTTTTGCAAATATGTTTT
CAGAAGTGAATTTAGTGAGT

Product: purine phosphorylase family 1

Products: NA

Alternate protein names: UPase; UrdPase [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFKQDFRVPTGLENQIQYHIQCGPGDVAPVVIVPGDQGRVESIISKLHDPKKVSENRGLITYTGYHEDYPVSVTSTGMGG
PSASIVYEELINIGAKILIRIGSVAGLQEEIEEGDVIIPHACVRDDGASQYYVPQNFPAVASPEVYLRLISAAKSLNLDF
KTGINWSHSCFYNRDPEYFQRWSRYRVVSMDMEASSLFVVSALRGVKAGFIGICYANRFKQSNKDKVDLSVPDTNRSIIK
SSTSKAIDITLRAIKDLYQNEL

Sequences:

>Translated_262_residues
MFKQDFRVPTGLENQIQYHIQCGPGDVAPVVIVPGDQGRVESIISKLHDPKKVSENRGLITYTGYHEDYPVSVTSTGMGG
PSASIVYEELINIGAKILIRIGSVAGLQEEIEEGDVIIPHACVRDDGASQYYVPQNFPAVASPEVYLRLISAAKSLNLDF
KTGINWSHSCFYNRDPEYFQRWSRYRVVSMDMEASSLFVVSALRGVKAGFIGICYANRFKQSNKDKVDLSVPDTNRSIIK
SSTSKAIDITLRAIKDLYQNEL
>Mature_262_residues
MFKQDFRVPTGLENQIQYHIQCGPGDVAPVVIVPGDQGRVESIISKLHDPKKVSENRGLITYTGYHEDYPVSVTSTGMGG
PSASIVYEELINIGAKILIRIGSVAGLQEEIEEGDVIIPHACVRDDGASQYYVPQNFPAVASPEVYLRLISAAKSLNLDF
KTGINWSHSCFYNRDPEYFQRWSRYRVVSMDMEASSLFVVSALRGVKAGFIGICYANRFKQSNKDKVDLSVPDTNRSIIK
SSTSKAIDITLRAIKDLYQNEL

Specific function: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synth

COG id: COG2820

COG function: function code F; Uridine phosphorylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

Organism=Escherichia coli, GI1790265, Length=256, Percent_Identity=32.8125, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1790844, Length=199, Percent_Identity=33.6683417085427, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- InterPro:   IPR010058 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.3 [H]

Molecular weight: Translated: 29131; Mature: 29131

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00014 ER_TARGET ; PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKQDFRVPTGLENQIQYHIQCGPGDVAPVVIVPGDQGRVESIISKLHDPKKVSENRGLI
CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHCCCCEE
TYTGYHEDYPVSVTSTGMGGPSASIVYEELINIGAKILIRIGSVAGLQEEIEEGDVIIPH
EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHEEEEECCHHCHHHHHHCCCEEECC
ACVRDDGASQYYVPQNFPAVASPEVYLRLISAAKSLNLDFKTGINWSHSCFYNRDPEYFQ
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCHHHHH
RWSRYRVVSMDMEASSLFVVSALRGVKAGFIGICYANRFKQSNKDKVDLSVPDTNRSIIK
HHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCEEEEECCCCCHHHHH
SSTSKAIDITLRAIKDLYQNEL
CCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKQDFRVPTGLENQIQYHIQCGPGDVAPVVIVPGDQGRVESIISKLHDPKKVSENRGLI
CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHCCCCEE
TYTGYHEDYPVSVTSTGMGGPSASIVYEELINIGAKILIRIGSVAGLQEEIEEGDVIIPH
EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHEEEEECCHHCHHHHHHCCCEEECC
ACVRDDGASQYYVPQNFPAVASPEVYLRLISAAKSLNLDFKTGINWSHSCFYNRDPEYFQ
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCHHHHH
RWSRYRVVSMDMEASSLFVVSALRGVKAGFIGICYANRFKQSNKDKVDLSVPDTNRSIIK
HHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCEEEEECCCCCHHHHH
SSTSKAIDITLRAIKDLYQNEL
CCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]