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The map label for this gene is ymfC [H]

Identifier: 160901787

GI number: 160901787

Start: 325604

End: 326353

Strand: Direct

Name: ymfC [H]

Synonym: Pmob_0303

Alternate gene names: 160901787

Gene position: 325604-326353 (Clockwise)

Preceding gene: 160901786

Following gene: 160901788

Centisome position: 15.01

GC content: 32.8

Gene sequence:

>750_bases
ATGATTTCAAAAGCTGGTAGATCCTTATATAAAGAAATATTGAATGAATTAAGAACAAAAATAACTCAACTCCCTGAAGG
GTATAAATTACCCTCTCAACAGGAACTATGTGAAAATTTAGGGGTTAGCAGAACATTAATCAGAGAAGTATTAGTAAGCC
TTGAGCGAGAAGGTTTGATCATTAGAAAACAAGGACTTGGTACATTTGTAGTGAAGAAAGAAGGTATTGTTCAAACAGGC
TTAGATTATTTAAGGGGTGTTTCAACTATAATTTCGACCTCAGGAAAATTACCTGACCTTATTTTAAACGAGTTTGAGGA
AGTAGACGCATCTCCTTCGCTCTCAAAAAAATTGGAAATTACTCCTAAAGAACCATTAATCAAAATTAAAAGAGTTTATA
CGGCTGACGGTATCCCCGTTATATACGCAGAAACGTATATGGTTATCAACAGGATTCCCGGAGGGAAAGACGCAATAATT
TCCGTTTTAAAAGATGAAAACAGTAAAAATGAGGAGATTTTTACCTATTTAGACAAATATTTTATGAGACCCATTAAACA
TGCTATCTCAGAAATAGAAGCTATTGATGCTGATAAGAAACTTGCCAACTTATTGAAAATTCCCGAGAAAAAAGCAGTCA
CTCTTTTATTAGAAGTTCACTACGATGAAAATAATATTCCCTTACTTCACTCATTGGATTACATAAATACCTCTATTTTC
AAATTGAGTGTATTCAGAAGAAAAATATAA

Upstream 100 bases:

>100_bases
TTAAAGTTATAATTAGAATAAAGATATGAAGTATGATATGTTATTTAATTTTAACCTAAAAGTTATTTTATTTTCATGTT
TTAATCTGAGGAGGTGCTAA

Downstream 100 bases:

>100_bases
CGTATTTAAAACTACAAGGAGGAGATTCTGTGTTTAAACAAGATTTTAGGGTTCCAACAGGATTAGAAAATCAAATTCAA
TACCATATTCAATGTGGGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MISKAGRSLYKEILNELRTKITQLPEGYKLPSQQELCENLGVSRTLIREVLVSLEREGLIIRKQGLGTFVVKKEGIVQTG
LDYLRGVSTIISTSGKLPDLILNEFEEVDASPSLSKKLEITPKEPLIKIKRVYTADGIPVIYAETYMVINRIPGGKDAII
SVLKDENSKNEEIFTYLDKYFMRPIKHAISEIEAIDADKKLANLLKIPEKKAVTLLLEVHYDENNIPLLHSLDYINTSIF
KLSVFRRKI

Sequences:

>Translated_249_residues
MISKAGRSLYKEILNELRTKITQLPEGYKLPSQQELCENLGVSRTLIREVLVSLEREGLIIRKQGLGTFVVKKEGIVQTG
LDYLRGVSTIISTSGKLPDLILNEFEEVDASPSLSKKLEITPKEPLIKIKRVYTADGIPVIYAETYMVINRIPGGKDAII
SVLKDENSKNEEIFTYLDKYFMRPIKHAISEIEAIDADKKLANLLKIPEKKAVTLLLEVHYDENNIPLLHSLDYINTSIF
KLSVFRRKI
>Mature_249_residues
MISKAGRSLYKEILNELRTKITQLPEGYKLPSQQELCENLGVSRTLIREVLVSLEREGLIIRKQGLGTFVVKKEGIVQTG
LDYLRGVSTIISTSGKLPDLILNEFEEVDASPSLSKKLEITPKEPLIKIKRVYTADGIPVIYAETYMVINRIPGGKDAII
SVLKDENSKNEEIFTYLDKYFMRPIKHAISEIEAIDADKKLANLLKIPEKKAVTLLLEVHYDENNIPLLHSLDYINTSIF
KLSVFRRKI

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=243, Percent_Identity=25.5144032921811, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082252, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788418, Length=226, Percent_Identity=21.6814159292035, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28242; Mature: 28242

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKAGRSLYKEILNELRTKITQLPEGYKLPSQQELCENLGVSRTLIREVLVSLEREGLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEE
IRKQGLGTFVVKKEGIVQTGLDYLRGVSTIISTSGKLPDLILNEFEEVDASPSLSKKLEI
EEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEC
TPKEPLIKIKRVYTADGIPVIYAETYMVINRIPGGKDAIISVLKDENSKNEEIFTYLDKY
CCCCHHHHHHHHHCCCCCEEEEEHHHHHEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
FMRPIKHAISEIEAIDADKKLANLLKIPEKKAVTLLLEVHYDENNIPLLHSLDYINTSIF
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCCEEHHHHHHHHHH
KLSVFRRKI
HHHHHHHCC
>Mature Secondary Structure
MISKAGRSLYKEILNELRTKITQLPEGYKLPSQQELCENLGVSRTLIREVLVSLEREGLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEE
IRKQGLGTFVVKKEGIVQTGLDYLRGVSTIISTSGKLPDLILNEFEEVDASPSLSKKLEI
EEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEC
TPKEPLIKIKRVYTADGIPVIYAETYMVINRIPGGKDAIISVLKDENSKNEEIFTYLDKY
CCCCHHHHHHHHHCCCCCEEEEEHHHHHEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
FMRPIKHAISEIEAIDADKKLANLLKIPEKKAVTLLLEVHYDENNIPLLHSLDYINTSIF
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEEEEEECCCCCCCEEHHHHHHHHHH
KLSVFRRKI
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]