| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is irgA [H]
Identifier: 160877470
GI number: 160877470
Start: 5162623
End: 5165022
Strand: Direct
Name: irgA [H]
Synonym: Sbal195_4368
Alternate gene names: 160877470
Gene position: 5162623-5165022 (Clockwise)
Preceding gene: 160877469
Following gene: 160877471
Centisome position: 96.55
GC content: 48.96
Gene sequence:
>2400_bases ATGCATTCCGTTGAATTTGGCCGTTCGCGACCCAAAAAATACCGCGCTAACTACTTGTCCCTTATGGGCCTGAGTTTCAC AGTCATCTTAAGCATTACAGCACCGCAGCCATCACAGGCTCAAACTGTCGATGTTGATGCCAGACAAATCAACAAGCTAC AACATTATCAAATTAAGGCGGGCACGCTCGATGCCGTACTGAACAGCTTTGCTCTGGCCGCGAATATTGATCTGTCGATA TCTTCAGCACTCACTCAGGGTAAGATCAGCCCGGGGCTAGAAGGTCAATATTCAATTGAAGAAGGCTTACAAAAGATACT GGCAGGGACGGGTTTACAGGTCACATCGCGCCTTGAGGGGCAATATATTCTCGGCAAGGCGACCGTCGCAATAGTGTTGG CACCCATAACGGTTATCAGCGCTGCGGGTTATGAACAGGATATCAAAAATGCGCCAGCGAGCATCAGTGTGCTTTCAGGC AATGATCTAGAGCAACGCAAATTTAATTCGCTGCAAGATATTGCACGGGAAATTCCCGGTGTCAATGTGATTGGCTCTGG CGCACAGAGCGGAATATCCATACGCGGCATGGAGAAGGGTTATACGTTAGTGCTCGTTGACGGTAAGCGGGTACGCTCGG ATACGGGGAATCCACGAGGATTGAACAACGAAGATCTCGATAGCAATTTTATCCCTCCCGTTGCGTCAATTGATCGGGTC GAGGTTGTTCGTGGGCCCATGAGCTCACTTTATGGTAGCGATGCAATGGGCGGCATCATCAATATCATTACCAAGAAAAC ACCTGAAAAATGGAGCGCCAGCGCGGGCTATGGTCTGCGCGTTCCGGACAGCAGCTCAATGGGAAACCAAAACCAACAGG ATCTCTATATTACAGGGCCACTGGTTAAGGATCTGCTTGGGATTTCGCTATGGGGAAATCAAGCCGTCCAAGACGAAGAC AAATATTACGGTGGATATCAGGAGTCGACTAAGAAAACGCTTGGCAGTAAGTTACGGATCACGCCTCATCGTGACCACGA AGTCATCCTTGACTACTCAAAGGCGAGTCAGCGCTACATTGGCAATCCTGGCGGCGTGCTACTGCCTAATGCCAGAGGTA GCATTGACCGCGAATGGACCCGAGATGCATGGAGCATTGCCTACAATGCCTTGTTCGATCTTGGCGAACTAGAACTGAAA TACTATGAAGAAGATTATGAAAGACTGACTTATCCTGCTGCAGCTGATTTCACTACAGGATCAACAAACAAAGTCAGCGA TGCACGCTTCATTACAGGTGTGGATAGCCATACTCTGACTTTCGGTGGTCAATGGACTAACGACAAACTAACTAACGGTG ATTTAGGCAATGGCTCTCCCCGAAGCTTTGGCACCCGCTCTGTCAGCGATTTCAGTATTTTTGCTGAAGACGAATGGGAG CTGCTCACAGAGAAACTTTATCTCACCCTTGGTGCGCGACTAACGGATAACGAATTCTTTGGTCATCATGTCTCACCTAG AGCATATCTTGTTTTCAATCATAACGATCACTGGACTTTCAAAGGCGGCATCGCCACTGGCTACAAGAGCCCGAAGATTG ACCAGATTGATAACACCACAGGCTCTCAACGCGGCGGCGGTACGAGTCAGTTTGTCATTGTTGGTAATCCGGACTTAGAG CCAGAACAAAGCACGAATTATGAAATCGGCGCGCTTTACACTAAAGATGACACGCTAAATATCGGCGCAACGCTATTTTT CAATGACTTTTCCAACAAAATCCTCAACACCAACACCTTCTATTTCGACGATGGTAACGGTGGATATATTCCAGCCTATT GCATTTCAGGTGACGTTGGCACCAAAGACTGCCCAGCTTGGGCCACTTGGCTAAATGCCAAGGGAGCACAGATCCGCGGT GTCGAACTTGAAGGCCACTGGGACATGACTAATACCTTGGCGCTCAAAGCGAGTTACACCTATACCGATTCACGAATTGA CGCAGACAACGTGATCATCAATACCCCCGCGGGTCCACGCCCTTTCGGTGACACCTTGGCATTGCTGGACGGAAATTCGC TCGTCGGCATTCCAAATCATAACGGCTCAATAACGCTCGACTACCAACCTACTGAGGCACTCTCGGCATTCCTGCGAGGT AATTATGAGGGCGAGATCACCCGAGTCAGCTTCGAGCGCAACACGGTCGATAAGAGTGACAAGGATTTGATCACGCTGGA CGCAGGTCTGAACTATTCGCTGAACCGCTATATTAGCTTCAACGTCGGGATAGACAACATCACCGACGCTACACGATTTA AAGTGAATAACGATACTGGGGCCTACCGCTATTCAGAGCGCGGACGTAGCTATTTCGTTAGCGTTAAGACGCAATTCTGA
Upstream 100 bases:
>100_bases ACCTTAACGCTGAAAATTATTTTCAAAAATTTTTACGGGTTTTGCGATCTCGTTCGGAATAGTAGATAGAACTTATTAAC TTTCCCCCTTGGGACTCTCT
Downstream 100 bases:
>100_bases ATATGGGCCTACATATCATGCTCGAAAAAGACTCACGATTGTCCCATCAATCGAAGCGCGGCAATCAAAGCGCCGTTGGC AAATGGCTGTTCACCACTGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues MHSVEFGRSRPKKYRANYLSLMGLSFTVILSITAPQPSQAQTVDVDARQINKLQHYQIKAGTLDAVLNSFALAANIDLSI SSALTQGKISPGLEGQYSIEEGLQKILAGTGLQVTSRLEGQYILGKATVAIVLAPITVISAAGYEQDIKNAPASISVLSG NDLEQRKFNSLQDIAREIPGVNVIGSGAQSGISIRGMEKGYTLVLVDGKRVRSDTGNPRGLNNEDLDSNFIPPVASIDRV EVVRGPMSSLYGSDAMGGIINIITKKTPEKWSASAGYGLRVPDSSSMGNQNQQDLYITGPLVKDLLGISLWGNQAVQDED KYYGGYQESTKKTLGSKLRITPHRDHEVILDYSKASQRYIGNPGGVLLPNARGSIDREWTRDAWSIAYNALFDLGELELK YYEEDYERLTYPAAADFTTGSTNKVSDARFITGVDSHTLTFGGQWTNDKLTNGDLGNGSPRSFGTRSVSDFSIFAEDEWE LLTEKLYLTLGARLTDNEFFGHHVSPRAYLVFNHNDHWTFKGGIATGYKSPKIDQIDNTTGSQRGGGTSQFVIVGNPDLE PEQSTNYEIGALYTKDDTLNIGATLFFNDFSNKILNTNTFYFDDGNGGYIPAYCISGDVGTKDCPAWATWLNAKGAQIRG VELEGHWDMTNTLALKASYTYTDSRIDADNVIINTPAGPRPFGDTLALLDGNSLVGIPNHNGSITLDYQPTEALSAFLRG NYEGEITRVSFERNTVDKSDKDLITLDAGLNYSLNRYISFNVGIDNITDATRFKVNNDTGAYRYSERGRSYFVSVKTQF
Sequences:
>Translated_799_residues MHSVEFGRSRPKKYRANYLSLMGLSFTVILSITAPQPSQAQTVDVDARQINKLQHYQIKAGTLDAVLNSFALAANIDLSI SSALTQGKISPGLEGQYSIEEGLQKILAGTGLQVTSRLEGQYILGKATVAIVLAPITVISAAGYEQDIKNAPASISVLSG NDLEQRKFNSLQDIAREIPGVNVIGSGAQSGISIRGMEKGYTLVLVDGKRVRSDTGNPRGLNNEDLDSNFIPPVASIDRV EVVRGPMSSLYGSDAMGGIINIITKKTPEKWSASAGYGLRVPDSSSMGNQNQQDLYITGPLVKDLLGISLWGNQAVQDED KYYGGYQESTKKTLGSKLRITPHRDHEVILDYSKASQRYIGNPGGVLLPNARGSIDREWTRDAWSIAYNALFDLGELELK YYEEDYERLTYPAAADFTTGSTNKVSDARFITGVDSHTLTFGGQWTNDKLTNGDLGNGSPRSFGTRSVSDFSIFAEDEWE LLTEKLYLTLGARLTDNEFFGHHVSPRAYLVFNHNDHWTFKGGIATGYKSPKIDQIDNTTGSQRGGGTSQFVIVGNPDLE PEQSTNYEIGALYTKDDTLNIGATLFFNDFSNKILNTNTFYFDDGNGGYIPAYCISGDVGTKDCPAWATWLNAKGAQIRG VELEGHWDMTNTLALKASYTYTDSRIDADNVIINTPAGPRPFGDTLALLDGNSLVGIPNHNGSITLDYQPTEALSAFLRG NYEGEITRVSFERNTVDKSDKDLITLDAGLNYSLNRYISFNVGIDNITDATRFKVNNDTGAYRYSERGRSYFVSVKTQF >Mature_799_residues MHSVEFGRSRPKKYRANYLSLMGLSFTVILSITAPQPSQAQTVDVDARQINKLQHYQIKAGTLDAVLNSFALAANIDLSI SSALTQGKISPGLEGQYSIEEGLQKILAGTGLQVTSRLEGQYILGKATVAIVLAPITVISAAGYEQDIKNAPASISVLSG NDLEQRKFNSLQDIAREIPGVNVIGSGAQSGISIRGMEKGYTLVLVDGKRVRSDTGNPRGLNNEDLDSNFIPPVASIDRV EVVRGPMSSLYGSDAMGGIINIITKKTPEKWSASAGYGLRVPDSSSMGNQNQQDLYITGPLVKDLLGISLWGNQAVQDED KYYGGYQESTKKTLGSKLRITPHRDHEVILDYSKASQRYIGNPGGVLLPNARGSIDREWTRDAWSIAYNALFDLGELELK YYEEDYERLTYPAAADFTTGSTNKVSDARFITGVDSHTLTFGGQWTNDKLTNGDLGNGSPRSFGTRSVSDFSIFAEDEWE LLTEKLYLTLGARLTDNEFFGHHVSPRAYLVFNHNDHWTFKGGIATGYKSPKIDQIDNTTGSQRGGGTSQFVIVGNPDLE PEQSTNYEIGALYTKDDTLNIGATLFFNDFSNKILNTNTFYFDDGNGGYIPAYCISGDVGTKDCPAWATWLNAKGAQIRG VELEGHWDMTNTLALKASYTYTDSRIDADNVIINTPAGPRPFGDTLALLDGNSLVGIPNHNGSITLDYQPTEALSAFLRG NYEGEITRVSFERNTVDKSDKDLITLDAGLNYSLNRYISFNVGIDNITDATRFKVNNDTGAYRYSERGRSYFVSVKTQF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG4771
COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=691, Percent_Identity=33.4298118668596, Blast_Score=302, Evalue=6e-83, Organism=Escherichia coli, GI1786798, Length=763, Percent_Identity=25.4259501965924, Blast_Score=147, Evalue=4e-36, Organism=Escherichia coli, GI1790405, Length=584, Percent_Identity=25.1712328767123, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1790743, Length=763, Percent_Identity=23.0668414154653, Blast_Score=96, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87491; Mature: 87491
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSVEFGRSRPKKYRANYLSLMGLSFTVILSITAPQPSQAQTVDVDARQINKLQHYQIKA CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCEEEECCHHHHCCCCEEEEEC GTLDAVLNSFALAANIDLSISSALTQGKISPGLEGQYSIEEGLQKILAGTGLQVTSRLEG CHHHHHHHHHEEEEECCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC QYILGKATVAIVLAPITVISAAGYEQDIKNAPASISVLSGNDLEQRKFNSLQDIAREIPG CEEECCCEEEEEEHHHHHHHHCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC VNVIGSGAQSGISIRGMEKGYTLVLVDGKRVRSDTGNPRGLNNEDLDSNFIPPVASIDRV CEEEECCCCCCEEEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH EVVRGPMSSLYGSDAMGGIINIITKKTPEKWSASAGYGLRVPDSSSMGNQNQQDLYITGP HHHHCCHHHHCCCCCCCHHEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECH LVKDLLGISLWGNQAVQDEDKYYGGYQESTKKTLGSKLRITPHRDHEVILDYSKASQRYI HHHHHHCEEECCCCCCCCCHHHCCCHHHHHHHHCCCEEEECCCCCCEEEEEECCCCHHCC GNPGGVLLPNARGSIDREWTRDAWSIAYNALFDLGELELKYYEEDYERLTYPAAADFTTG CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCCCCC STNKVSDARFITGVDSHTLTFGGQWTNDKLTNGDLGNGSPRSFGTRSVSDFSIFAEDEWE CCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH LLTEKLYLTLGARLTDNEFFGHHVSPRAYLVFNHNDHWTFKGGIATGYKSPKIDQIDNTT HHHHHEEEEECCEEECCCCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCCC GSQRGGGTSQFVIVGNPDLEPEQSTNYEIGALYTKDDTLNIGATLFFNDFSNKILNTNTF CCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEECCCEE YFDDGNGGYIPAYCISGDVGTKDCPAWATWLNAKGAQIRGVELEGHWDMTNTLALKASYT EEECCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEE YTDSRIDADNVIINTPAGPRPFGDTLALLDGNSLVGIPNHNGSITLDYQPTEALSAFLRG ECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCCCCEEEEEECCHHHHHHHHCC NYEGEITRVSFERNTVDKSDKDLITLDAGLNYSLNRYISFNVGIDNITDATRFKVNNDTG CCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCC AYRYSERGRSYFVSVKTQF CEEECCCCCEEEEEEEECC >Mature Secondary Structure MHSVEFGRSRPKKYRANYLSLMGLSFTVILSITAPQPSQAQTVDVDARQINKLQHYQIKA CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCEEEECCHHHHCCCCEEEEEC GTLDAVLNSFALAANIDLSISSALTQGKISPGLEGQYSIEEGLQKILAGTGLQVTSRLEG CHHHHHHHHHEEEEECCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC QYILGKATVAIVLAPITVISAAGYEQDIKNAPASISVLSGNDLEQRKFNSLQDIAREIPG CEEECCCEEEEEEHHHHHHHHCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC VNVIGSGAQSGISIRGMEKGYTLVLVDGKRVRSDTGNPRGLNNEDLDSNFIPPVASIDRV CEEEECCCCCCEEEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH EVVRGPMSSLYGSDAMGGIINIITKKTPEKWSASAGYGLRVPDSSSMGNQNQQDLYITGP HHHHCCHHHHCCCCCCCHHEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECH LVKDLLGISLWGNQAVQDEDKYYGGYQESTKKTLGSKLRITPHRDHEVILDYSKASQRYI HHHHHHCEEECCCCCCCCCHHHCCCHHHHHHHHCCCEEEECCCCCCEEEEEECCCCHHCC GNPGGVLLPNARGSIDREWTRDAWSIAYNALFDLGELELKYYEEDYERLTYPAAADFTTG CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCCCCC STNKVSDARFITGVDSHTLTFGGQWTNDKLTNGDLGNGSPRSFGTRSVSDFSIFAEDEWE CCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH LLTEKLYLTLGARLTDNEFFGHHVSPRAYLVFNHNDHWTFKGGIATGYKSPKIDQIDNTT HHHHHEEEEECCEEECCCCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCCC GSQRGGGTSQFVIVGNPDLEPEQSTNYEIGALYTKDDTLNIGATLFFNDFSNKILNTNTF CCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEECCCEE YFDDGNGGYIPAYCISGDVGTKDCPAWATWLNAKGAQIRGVELEGHWDMTNTLALKASYT EEECCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEE YTDSRIDADNVIINTPAGPRPFGDTLALLDGNSLVGIPNHNGSITLDYQPTEALSAFLRG ECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCCCCEEEEEECCHHHHHHHHCC NYEGEITRVSFERNTVDKSDKDLITLDAGLNYSLNRYISFNVGIDNITDATRFKVNNDTG CCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCC AYRYSERGRSYFVSVKTQF CEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]