| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is plsB [H]
Identifier: 160877410
GI number: 160877410
Start: 5089905
End: 5092328
Strand: Reverse
Name: plsB [H]
Synonym: Sbal195_4308
Alternate gene names: 160877410
Gene position: 5092328-5089905 (Counterclockwise)
Preceding gene: 160877417
Following gene: 160877409
Centisome position: 95.23
GC content: 48.35
Gene sequence:
>2424_bases ATGCCTAAACACGACTCTCTTTGGTTGAAATCATTACGCTGGATCCAAAAACACTTAGTGCACACTATTGTTGTGCCTCA GGATCCCTTTGCCGATCTGAATCTGGATGCCTCCAGACCCCTTGCTTATGTGATGAAAACGGAATCGCTGAGTGACATCG CTGCCTTGAGCGAAATAACGGCTAAGTTAGGACTACCGAGCCCCTATGAGCCTTTAGTGGCAAATGGTGTTATTGCGCCT CGGGTTGTCTGCCTTCAAGGGCGTAAGCCGCTGTTTGGCGAGCGTGCCGGTAACGAGCCTTTCCTCGAATGCTTTATGCG TTTGTTGGCCGTGCATAAGGAACGCCCTGAATTAGACATTCAACTGGTGCCCGTGAGCCTGTATTGGGGCCGCACGCCAG GGAAAGAAGACGACACTATGAAGGCGGCTGTGTTTGAGCGGGAAAACCCGACTTGGCTGCGCAAATGCTTGATGATTCTA TTCTTAGGTCGACATAACTTCGTGCAGTTTTCGAATGCCGTATCCCTGCGATATATGGCAGACGAACACGGCACTGACAT GGGGATCGCCCATAAGTTAGCGCGGGTCGCGCGGGTGCATTTCCGTCGTCAACGTAAGGTGATGACTGGACCTGTGCTGC CAAATCGCCAAGCACTGTTTCATTCGTTGCTCAAATCCGAGTCGTTGCGTAAAGCGATTCAAGAAGAAGCGGCCAACAAA AAGATTTCTGAGACCCAAGCGCGCGAGACTGCCATTGAGTATCTCGATGAAATCGCTGCAGATTACTCAGATAGTTTAGT GCGTATTGCCGAGCGTTTTTTAACTTGGTTGTGGAACAAGCTTTACAGCGGGATCAACATCAAAGGCGCCGAGCAAGTTC GCCAGTTGCACCATGATGGCCACGAGATTGTCTATGTACCTTGTCATCGCAGCCACATGGATTACCTGCTGTTATCGTAT ATTTTGTATTATCAAGGCATGGTTCCGCCGCACATTGCTGCCGGTATTAACCTCAACTTTTGGCCCGCCGGACCTATGTT CCGTCGCGGTGGTGCCTTCTTTATCCGCCGTAGTTTTAATGGCAACAAGCTGTATACCGCAGTATTCCGTGAGTATTTAG ATCAACTGTTTGCTAAAGGTTATTCGGTGGAATATTTCTCCGAAGGCGGCCGCTCACGTACGGGTCGGCTATTGGCGCCA AAAACCGGCATGATCGCTATGACGATGAACAGCGTGCTGCGCGGTATCGAGCGTCCAGTCACGCTAGTGCCTGTGTATTT AGGCTATGACCATGTGATGGAAGTGGCGACTTACCATAAAGAGTTAAGTGGTAAGAAAAAGAAAAAAGAATCTGTGTGGC AGGTGTTTGGTGCGATTCGCAAACTGGGTAATTTCGGCCAAGGGTATGTGAACTTTGGCGAGCCGATTACTCTGCAAAAC TTCTTAAATGAGCGCGCGCCAAACTGGCGTACTGAGTTGGCCGATGATCCTGAGCAAAAACCAAGCTGGTTAACGCCAGC GGTAAACGTGCTGGCGAATCGAGTGATGACAAATATCAACGATGCGGCGGCGGCGAGTTCGGTGACCTTGACGAGTTTAG TGTTGCTGGCCACAGATCAAAATGCCTTAGAGCGCAGTCTGTTGGAACGTCAGCTTGATCTGTATCTGACCCTACTCAAA AAAGTGCCTTACACTACTTATACTTCGGTTGCCGAAGGTGATGGCAAGCATTTAGTGCAGCAAGGTTTAGAGCTGAACAA GTTTGTTGTGTGTGCCGATCCTTTAGGTGAAATCGTGTCTATCGAGGCGAGTCAGGCAGTGTCTATGACTTACTATCGTA ACAATATCATTCACTTATTTATTGTGCCGTCATTAATTGCGAGCTGCTTAACGCATAATGAGCAGATCCCGCGTCAGCAA GTGGTGTCAATCGTTGCCGATTTTTATCCACTGCTGAAAGCCGAACTCTTTATGGGCATTAAAGATGTACCTGCCTATGT CAATCAAGTGCTGGATTTCTTCATTGAACAAGGGTTAGTAGTCGAGACTGATACCTTAACTGTCGTGCCTGAACACACTA GCCAACTATTATTGTTAGCCAGTTCAGTGAGCGAGACCCTGCAACGCTATGCCATTATTTTCAATCTGTTAGCAAACAGA CCTAAGATGGAGCGCTCAGAACTTGAGTCAGAGAGTCATCTACTCGCCCAGCGTTTAGGCGCTTTGCATGGCATTACCGC GCCTGAGTTCTACGATAAGAAACTTTACGGCACCTTGAGCGTTAAGCTCAAAGAATTGGGATATCTAGCGGATAACCAAG ATAAGTCCAATATCAATCGCATACGAGATCAAGCCAATAGCTTATTACGTCCGTCAGTGAAACAAACGATAGTGGCGAGT GTCACCGCGGAGCATACAGTTTAA
Upstream 100 bases:
>100_bases GTATTAACCACTTTTTAGCTATGTTGGAGAGAATTAGCGAATATTACCCATAGTCTGGTATTCTACCGGGCTAGTAAACG TACTTAATTGCATAAGAATA
Downstream 100 bases:
>100_bases TGGCAAATCATATGAATGCGGCTAAGCATAAGCCCGCAGGTAAGTCCTTGCTCGGTGGCGCCATGATTATTGCCGGTACG ACCGTAGGTGCTGGGATGTT
Product: glycerol-3-phosphate acyltransferase
Products: NA
Alternate protein names: GPAT [H]
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MPKHDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDASRPLAYVMKTESLSDIAALSEITAKLGLPSPYEPLVANGVIAP RVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVFERENPTWLRKCLMIL FLGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPVLPNRQALFHSLLKSESLRKAIQEEAANK KISETQARETAIEYLDEIAADYSDSLVRIAERFLTWLWNKLYSGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPMFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAP KTGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLQN FLNERAPNWRTELADDPEQKPSWLTPAVNVLANRVMTNINDAAAASSVTLTSLVLLATDQNALERSLLERQLDLYLTLLK KVPYTTYTSVAEGDGKHLVQQGLELNKFVVCADPLGEIVSIEASQAVSMTYYRNNIIHLFIVPSLIASCLTHNEQIPRQQ VVSIVADFYPLLKAELFMGIKDVPAYVNQVLDFFIEQGLVVETDTLTVVPEHTSQLLLLASSVSETLQRYAIIFNLLANR PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLADNQDKSNINRIRDQANSLLRPSVKQTIVAS VTAEHTV
Sequences:
>Translated_807_residues MPKHDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDASRPLAYVMKTESLSDIAALSEITAKLGLPSPYEPLVANGVIAP RVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVFERENPTWLRKCLMIL FLGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPVLPNRQALFHSLLKSESLRKAIQEEAANK KISETQARETAIEYLDEIAADYSDSLVRIAERFLTWLWNKLYSGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPMFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAP KTGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLQN FLNERAPNWRTELADDPEQKPSWLTPAVNVLANRVMTNINDAAAASSVTLTSLVLLATDQNALERSLLERQLDLYLTLLK KVPYTTYTSVAEGDGKHLVQQGLELNKFVVCADPLGEIVSIEASQAVSMTYYRNNIIHLFIVPSLIASCLTHNEQIPRQQ VVSIVADFYPLLKAELFMGIKDVPAYVNQVLDFFIEQGLVVETDTLTVVPEHTSQLLLLASSVSETLQRYAIIFNLLANR PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLADNQDKSNINRIRDQANSLLRPSVKQTIVAS VTAEHTV >Mature_806_residues PKHDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDASRPLAYVMKTESLSDIAALSEITAKLGLPSPYEPLVANGVIAPR VVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVFERENPTWLRKCLMILF LGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPVLPNRQALFHSLLKSESLRKAIQEEAANKK ISETQARETAIEYLDEIAADYSDSLVRIAERFLTWLWNKLYSGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSYI LYYQGMVPPHIAAGINLNFWPAGPMFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPK TGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLQNF LNERAPNWRTELADDPEQKPSWLTPAVNVLANRVMTNINDAAAASSVTLTSLVLLATDQNALERSLLERQLDLYLTLLKK VPYTTYTSVAEGDGKHLVQQGLELNKFVVCADPLGEIVSIEASQAVSMTYYRNNIIHLFIVPSLIASCLTHNEQIPRQQV VSIVADFYPLLKAELFMGIKDVPAYVNQVLDFFIEQGLVVETDTLTVVPEHTSQLLLLASSVSETLQRYAIIFNLLANRP KMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLADNQDKSNINRIRDQANSLLRPSVKQTIVASV TAEHTV
Specific function: De novo phospholipid biosynthesis; first step. [C]
COG id: COG2937
COG function: function code I; Glycerol-3-phosphate O-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPAT/DAPAT family [H]
Homologues:
Organism=Homo sapiens, GI7657134, Length=269, Percent_Identity=34.9442379182156, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI190358539, Length=492, Percent_Identity=25, Blast_Score=141, Evalue=2e-33, Organism=Escherichia coli, GI87082362, Length=791, Percent_Identity=48.5461441213654, Blast_Score=765, Evalue=0.0, Organism=Caenorhabditis elegans, GI71988723, Length=463, Percent_Identity=28.2937365010799, Blast_Score=154, Evalue=1e-37, Organism=Caenorhabditis elegans, GI25147672, Length=306, Percent_Identity=34.3137254901961, Blast_Score=150, Evalue=3e-36, Organism=Caenorhabditis elegans, GI71988728, Length=389, Percent_Identity=30.8483290488432, Blast_Score=145, Evalue=6e-35, Organism=Drosophila melanogaster, GI17864692, Length=272, Percent_Identity=34.9264705882353, Blast_Score=162, Evalue=6e-40, Organism=Drosophila melanogaster, GI21357731, Length=406, Percent_Identity=28.0788177339901, Blast_Score=132, Evalue=9e-31, Organism=Drosophila melanogaster, GI24650754, Length=488, Percent_Identity=26.6393442622951, Blast_Score=132, Evalue=1e-30, Organism=Drosophila melanogaster, GI24650752, Length=489, Percent_Identity=26.5848670756646, Blast_Score=132, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002123 - InterPro: IPR022284 [H]
Pfam domain/function: PF01553 Acyltransferase [H]
EC number: =2.3.1.15 [H]
Molecular weight: Translated: 91248; Mature: 91116
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKHDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDASRPLAYVMKTESLSDIAALSEIT CCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH AKLGLPSPYEPLVANGVIAPRVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDI HHCCCCCCCCHHHHCCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE QLVPVSLYWGRTPGKEDDTMKAAVFERENPTWLRKCLMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCCCHHHHHEECCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDMGIAHKLARVARVHFRRQRKVMTGPVLPNRQALFHSLLKSESLRKAIQEEAANK CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KISETQARETAIEYLDEIAADYSDSLVRIAERFLTWLWNKLYSGINIKGAEQVRQLHHDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPMFRRGGAFFIRRSFN CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCCHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPKTGMIAMTMNSVLRGIERPV CCCHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLQN EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH FLNERAPNWRTELADDPEQKPSWLTPAVNVLANRVMTNINDAAAASSVTLTSLVLLATDQ HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCH NALERSLLERQLDLYLTLLKKVPYTTYTSVAEGDGKHLVQQGLELNKFVVCADPLGEIVS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCEE IEASQAVSMTYYRNNIIHLFIVPSLIASCLTHNEQIPRQQVVSIVADFYPLLKAELFMGI ECCHHHHEEEEHHCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH KDVPAYVNQVLDFFIEQGLVVETDTLTVVPEHTSQLLLLASSVSETLQRYAIIFNLLANR HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLADNQDKSNINR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHCCCCCCCCHHHHHH IRDQANSLLRPSVKQTIVASVTAEHTV HHHHHHHHHCCHHHHHHHHHHHHCCCC >Mature Secondary Structure PKHDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDASRPLAYVMKTESLSDIAALSEIT CCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH AKLGLPSPYEPLVANGVIAPRVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDI HHCCCCCCCCHHHHCCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE QLVPVSLYWGRTPGKEDDTMKAAVFERENPTWLRKCLMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCCCHHHHHEECCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDMGIAHKLARVARVHFRRQRKVMTGPVLPNRQALFHSLLKSESLRKAIQEEAANK CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KISETQARETAIEYLDEIAADYSDSLVRIAERFLTWLWNKLYSGINIKGAEQVRQLHHDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPMFRRGGAFFIRRSFN CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCCHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPKTGMIAMTMNSVLRGIERPV CCCHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLQN EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH FLNERAPNWRTELADDPEQKPSWLTPAVNVLANRVMTNINDAAAASSVTLTSLVLLATDQ HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCH NALERSLLERQLDLYLTLLKKVPYTTYTSVAEGDGKHLVQQGLELNKFVVCADPLGEIVS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCEE IEASQAVSMTYYRNNIIHLFIVPSLIASCLTHNEQIPRQQVVSIVADFYPLLKAELFMGI ECCHHHHEEEEHHCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH KDVPAYVNQVLDFFIEQGLVVETDTLTVVPEHTSQLLLLASSVSETLQRYAIIFNLLANR HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLADNQDKSNINR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHCCCCCCCCHHHHHH IRDQANSLLRPSVKQTIVASVTAEHTV HHHHHHHHHCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]