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The map label for this gene is yciR [C]

Identifier: 160877371

GI number: 160877371

Start: 5047789

End: 5049909

Strand: Direct

Name: yciR [C]

Synonym: Sbal195_4269

Alternate gene names: 160877371

Gene position: 5047789-5049909 (Clockwise)

Preceding gene: 160877365

Following gene: 160877374

Centisome position: 94.4

GC content: 45.73

Gene sequence:

>2121_bases
ATGATCAGATGGCAACACTTACTTAAGAAACTCAGTACGGATGATCCAGTACTGCAAGAAAAGCTGTCGCTCTGGCAAGC
ACATCCCCACAAAACTCCCCTAGCCTTAATTCAAGGCTTCAGCTTTATTAGCGCCAACCAAGCGACACTCGGTTATTTTG
AGACTGAGTATGATGCGTTTGTGAATGCGACGCCCTATGACTTTTCTCCGAGAATTCAATCATCCGGCCGCAACAGTGTT
GAATATGCGAGGGAAATGATCCTCGAAGCCATTGCAGGAAATAATGTTGAATTCAACTGGCTACACTTGAGTCAACTCGG
CAATGAACTGCCAACTCGAGTAAACCTTTATCGCTGCTATCTGCAGCAACAGCCCGTTGTGCTCGTGGAATTTCAAGCGC
TCAATCGCCGTAATCAAATGCGCGAAATTATTACCGATGGCTTTGCCCATATTCCTAAAGAGATTTTGTCGACGACGCTC
GAGGAAAGTGCCGAAGCTGTGTATATCACAGACTCAGATGATCAGATTTTGGCCGTTAATAAAGCTATGTGCCGTATTTG
CGGTTATAGCGCCGAGCAGCTTATCAGTAAAACCCCTGAATTTTTAGAGTTGAAAAGCCATCATTTAGGGGCAGAAACCG
AATGCCAAACTGCACTGAAGCAAAGGGGCTTTTGGCAGGGTGAAACCTGGAAGAAACGTTCAGATAGTAGCAATTTCCCT
GCTTGGCAGAGTAGCCGTAAAATCATTACCGAAGATGGCGCTCACTATAATGTGAATATTTTCAGTGATATTAGCACGAA
AAAGCTGCTCGAAACTCAACTGACGACCCGTGCTATGTACGATACCTTGACTGGATTGCCTAACCGATTCCACCTTAAGC
AGATCCTCAATACTGCCCTCGAAAAACTTAAAACCGATCCCCTCGCCCTCGGTGCGCTAATGTTTTTAGATCTCAATGGG
TTTAAAAATATCAATGACAGCTTCGGCCACTCCATGGGCGATAGAGTATTACAACTCGTCGCAGCCAGACTCGAAGCCGG
TTGCATCGAAAAAGCCGACATAGCCCGTATGGGTGGAGATGAGTTTACCTTAGTGCTGCAAGACTGCAGCTGCAAAGATG
AAATCCAACTGTTTGCAGAGCAGATACTTAGTCTATTTGAGAGCCCCTTTGAAATTGAAGGGCAAAAGTTTTTCCTAGGC
ACGAGTATCGGCATTGCGCTATTTCCGACCCACAGTGATAAAGCGGGACAACTGATTAGCCTTGCAGATACAGCCATGTA
TTGTGCTAAAAAGAGCTTACCGCACCTCGTGTTTTACGATAAGGCTATGAGCCAAGCAGCAGAATTAAAGCTGCAGTTAA
TCAATAGCCTAAGACATGCGCACAGCTTAAAACAATTCACTCTCGCCTATCAGGCCATTGTGGATTTACACACAAATCAA
ACGATAGCTGCTGAAGCCCTACTGCGCTGGCAAAAATCACCTACCGAGTATTATGACGCCGCCGATTTTGTGCCATTGCT
GGAAGAGACAGGGTTAATTGTCAGTATTGGTCAATGGGTATTGGAACAGGCTTGCGTGCAAGCGGCACAATGGCGGGCAC
ATAATCAGGCAGACTTTAGAATTTCAGTCAATGTGTCACCACTGCAATTGGAACACTTAGACTTTATCGACCAAGTAATT
AACGCCTTGGACATGGCTAATTTACCTGCTGAAGCACTGATTTTAGAAATCACCGAATCGGCACTGTTACGCCAACCTGA
GCAAGCACGACTCACACTCAACCGCATAAAAGCCCTAGGTGTCAGCATTGCTATCGATGATTTTGGTACTGGATTATCCT
CACTCAGTCGTTTAGGCACTTTGCCCATAGACAGTGTAAAAATTGATGCCGAGTTTGCCTTGCGCTTAAACGAAGTTTCA
GGACAAAAGCTCTGCAATGCCATAGTGCAGCTCGCGCAGGCACTGGATATTCACTTCGTCGCCGAAGGCATAGAGACTCA
ACAACAAAGGGACATAATGACAGACATGGGCCAAGGTTTTGCCCAAGGATTTCTTTTTGGCTACCCGAGTTCAGTCGATA
ACTTCACCCAAACCTTTCTTACGGAAAAACGCTTAGCTTAG

Upstream 100 bases:

>100_bases
TTTAACCCCATTGGAATGATGTACTATTGGGCAACTTCGTATCAACGAAGACCTAAAAAATAGGATGTGACCTTATATGT
GTCACAAGGGAGTATCCTAA

Downstream 100 bases:

>100_bases
AACGAATTAGAAATCTGCCGATGTTCGCATCGGCTCTATAGCCCAGCCAGCACACCACTAACGAATTGCTATTAATAATG
GAGTCACTCCCTGCAAAGCC

Product: PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MIRWQHLLKKLSTDDPVLQEKLSLWQAHPHKTPLALIQGFSFISANQATLGYFETEYDAFVNATPYDFSPRIQSSGRNSV
EYAREMILEAIAGNNVEFNWLHLSQLGNELPTRVNLYRCYLQQQPVVLVEFQALNRRNQMREIITDGFAHIPKEILSTTL
EESAEAVYITDSDDQILAVNKAMCRICGYSAEQLISKTPEFLELKSHHLGAETECQTALKQRGFWQGETWKKRSDSSNFP
AWQSSRKIITEDGAHYNVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRFHLKQILNTALEKLKTDPLALGALMFLDLNG
FKNINDSFGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFESPFEIEGQKFFLG
TSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAELKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQ
TIAAEALLRWQKSPTEYYDAADFVPLLEETGLIVSIGQWVLEQACVQAAQWRAHNQADFRISVNVSPLQLEHLDFIDQVI
NALDMANLPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVKIDAEFALRLNEVS
GQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFGYPSSVDNFTQTFLTEKRLA

Sequences:

>Translated_706_residues
MIRWQHLLKKLSTDDPVLQEKLSLWQAHPHKTPLALIQGFSFISANQATLGYFETEYDAFVNATPYDFSPRIQSSGRNSV
EYAREMILEAIAGNNVEFNWLHLSQLGNELPTRVNLYRCYLQQQPVVLVEFQALNRRNQMREIITDGFAHIPKEILSTTL
EESAEAVYITDSDDQILAVNKAMCRICGYSAEQLISKTPEFLELKSHHLGAETECQTALKQRGFWQGETWKKRSDSSNFP
AWQSSRKIITEDGAHYNVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRFHLKQILNTALEKLKTDPLALGALMFLDLNG
FKNINDSFGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFESPFEIEGQKFFLG
TSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAELKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQ
TIAAEALLRWQKSPTEYYDAADFVPLLEETGLIVSIGQWVLEQACVQAAQWRAHNQADFRISVNVSPLQLEHLDFIDQVI
NALDMANLPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVKIDAEFALRLNEVS
GQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFGYPSSVDNFTQTFLTEKRLA
>Mature_706_residues
MIRWQHLLKKLSTDDPVLQEKLSLWQAHPHKTPLALIQGFSFISANQATLGYFETEYDAFVNATPYDFSPRIQSSGRNSV
EYAREMILEAIAGNNVEFNWLHLSQLGNELPTRVNLYRCYLQQQPVVLVEFQALNRRNQMREIITDGFAHIPKEILSTTL
EESAEAVYITDSDDQILAVNKAMCRICGYSAEQLISKTPEFLELKSHHLGAETECQTALKQRGFWQGETWKKRSDSSNFP
AWQSSRKIITEDGAHYNVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRFHLKQILNTALEKLKTDPLALGALMFLDLNG
FKNINDSFGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFESPFEIEGQKFFLG
TSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAELKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQ
TIAAEALLRWQKSPTEYYDAADFVPLLEETGLIVSIGQWVLEQACVQAAQWRAHNQADFRISVNVSPLQLEHLDFIDQVI
NALDMANLPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVKIDAEFALRLNEVS
GQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFGYPSSVDNFTQTFLTEKRLA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=33.8709677419355, Blast_Score=232, Evalue=7e-62,
Organism=Escherichia coli, GI87081921, Length=413, Percent_Identity=31.2348668280872, Blast_Score=195, Evalue=8e-51,
Organism=Escherichia coli, GI226510982, Length=432, Percent_Identity=30.3240740740741, Blast_Score=182, Evalue=7e-47,
Organism=Escherichia coli, GI1787055, Length=382, Percent_Identity=26.9633507853403, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=32, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788849, Length=442, Percent_Identity=27.8280542986425, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=30.6034482758621, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=29.6137339055794, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87081980, Length=235, Percent_Identity=33.1914893617021, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=31.2236286919831, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=40.3726708074534, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=29.6610169491525, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=541, Percent_Identity=23.8447319778189, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=279, Percent_Identity=29.0322580645161, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=34.7305389221557, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=36, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=34.9726775956284, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=32.9192546583851, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=136, Percent_Identity=34.5588235294118, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=240, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 79222; Mature: 79222

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRWQHLLKKLSTDDPVLQEKLSLWQAHPHKTPLALIQGFSFISANQATLGYFETEYDAF
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCCEECEEECCHHHH
VNATPYDFSPRIQSSGRNSVEYAREMILEAIAGNNVEFNWLHLSQLGNELPTRVNLYRCY
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHH
LQQQPVVLVEFQALNRRNQMREIITDGFAHIPKEILSTTLEESAEAVYITDSDDQILAVN
HCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHH
KAMCRICGYSAEQLISKTPEFLELKSHHLGAETECQTALKQRGFWQGETWKKRSDSSNFP
HHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AWQSSRKIITEDGAHYNVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRFHLKQILNTAL
CCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EKLKTDPLALGALMFLDLNGFKNINDSFGHSMGDRVLQLVAARLEAGCIEKADIARMGGD
HHHCCCHHHHHHHHHEECCCCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
EFTLVLQDCSCKDEIQLFAEQILSLFESPFEIEGQKFFLGTSIGIALFPTHSDKAGQLIS
CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCEEEEECCCCCCCCCHH
LADTAMYCAKKSLPHLVFYDKAMSQAAELKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQ
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TIAAEALLRWQKSPTEYYDAADFVPLLEETGLIVSIGQWVLEQACVQAAQWRAHNQADFR
HHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEE
ISVNVSPLQLEHLDFIDQVINALDMANLPAEALILEITESALLRQPEQARLTLNRIKALG
EEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VSIAIDDFGTGLSSLSRLGTLPIDSVKIDAEFALRLNEVSGQKLCNAIVQLAQALDIHFV
EEEEECCCCCCHHHHHHHCCCCCCCEEECHHHHEEEHHCCHHHHHHHHHHHHHHHHHHHH
AEGIETQQQRDIMTDMGQGFAQGFLFGYPSSVDNFTQTFLTEKRLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRWQHLLKKLSTDDPVLQEKLSLWQAHPHKTPLALIQGFSFISANQATLGYFETEYDAF
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCCEECEEECCHHHH
VNATPYDFSPRIQSSGRNSVEYAREMILEAIAGNNVEFNWLHLSQLGNELPTRVNLYRCY
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHH
LQQQPVVLVEFQALNRRNQMREIITDGFAHIPKEILSTTLEESAEAVYITDSDDQILAVN
HCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHH
KAMCRICGYSAEQLISKTPEFLELKSHHLGAETECQTALKQRGFWQGETWKKRSDSSNFP
HHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AWQSSRKIITEDGAHYNVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRFHLKQILNTAL
CCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EKLKTDPLALGALMFLDLNGFKNINDSFGHSMGDRVLQLVAARLEAGCIEKADIARMGGD
HHHCCCHHHHHHHHHEECCCCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
EFTLVLQDCSCKDEIQLFAEQILSLFESPFEIEGQKFFLGTSIGIALFPTHSDKAGQLIS
CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCEEEEECCCCCCCCCHH
LADTAMYCAKKSLPHLVFYDKAMSQAAELKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQ
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TIAAEALLRWQKSPTEYYDAADFVPLLEETGLIVSIGQWVLEQACVQAAQWRAHNQADFR
HHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEE
ISVNVSPLQLEHLDFIDQVINALDMANLPAEALILEITESALLRQPEQARLTLNRIKALG
EEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VSIAIDDFGTGLSSLSRLGTLPIDSVKIDAEFALRLNEVSGQKLCNAIVQLAQALDIHFV
EEEEECCCCCCHHHHHHHCCCCCCCEEECHHHHEEEHHCCHHHHHHHHHHHHHHHHHHHH
AEGIETQQQRDIMTDMGQGFAQGFLFGYPSSVDNFTQTFLTEKRLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]