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The map label for this gene is yidZ [H]

Identifier: 160877374

GI number: 160877374

Start: 5052518

End: 5053489

Strand: Direct

Name: yidZ [H]

Synonym: Sbal195_4272

Alternate gene names: 160877374

Gene position: 5052518-5053489 (Clockwise)

Preceding gene: 160877371

Following gene: 160877375

Centisome position: 94.49

GC content: 49.59

Gene sequence:

>972_bases
GTGAATATCGACAACTTAGCCAGAATCGATCTTAACTTGCTGGTCATACTCAAAGTTCTGCTAGAAGAGCAAAGCGTGAC
TCGCGCCGCCAGCCGATTGCATATAAGCCAGTCAGCCCTCAGTAAGAGCTTAAATCGGCTCAGAGAAAACTTAGATGATC
CCCTATTTCAGCGCACGGCACACGGCTTAAAACCGACGGCGCACGCCCTAATTCTTGGGCAAAAACTGCCGAATATTTTG
CAAGACTTGTATCAACTCACCCAGCCTCCGACCTTCAATCCCGCCAGTAGCAATCGACAATTCTCCTTTGCCATGGTGGA
AAGCGCCTATGAAACCTTAATCCCGTATTTTATTGGCCCTATGCTGACCACGGCGCCCAACGTCAAACTTGACTCCTATG
TCTGGACCGAAAAATCGATGCAGGATTTACAACAAGGGCAAATTGACTTTGGTATTTCAGGGCGGGACTTGCATCCATTG
TCCGATTTTCAGGTGGATCGCCTGCCCGAAGGGATTGCCTATCAAACACTGTTTACCGATCAACAAGTATGTTTAGTCCG
TGAAGACCACCCGCTGATGGCGGCGCTCACTTCAGCACAATGGAAGCTCCCACTCTACCTCGACATGGCCCATGTGCAGG
TTCGCTGTGAAGGCAGCGATTGGTGGGCACTGGATTACTTTCTTGCCGATCTCGGCCATCGACGCCGGATCAGTACGACA
GTACCCGATTTTTATGGTGCCGCCAGTGTATGCGCCCACAGCGATTTAATCTTCACTCTGCCCTCGAGCTTTGCAAGGCA
CGCCTGCCAGCTCTATCCGCTTAAACTACTGCCCTTACCCTTCGAATTTATGCCCATGGCCTATGTGCTGCTATGGCATC
AACGAAATGATGAAGATCAAGGGCATAAATGGATTAGAGAAACGATTTGCCAGAGTGTCGCTAAGTTATTTACTCCCGCA
GAAATGCTTTAA

Upstream 100 bases:

>100_bases
TGATCAGAAAAAGGTATTTCAGTGGGCGCTATTTTAATTAACTCAAGGTATGAACAGAAATGGTATAATTTCCAAAGTAA
ATTTCCTCTGAGGAATATCT

Downstream 100 bases:

>100_bases
TACCAATCACTTTAAATATCTAATCAGTTCAGAGCCTCACAGGCATTTCAATCCAAGGCGCATTGACGCAGAAATGGTTA
TTCCCTTTTAAGTCAATGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNIDNLARIDLNLLVILKVLLEEQSVTRAASRLHISQSALSKSLNRLRENLDDPLFQRTAHGLKPTAHALILGQKLPNIL
QDLYQLTQPPTFNPASSNRQFSFAMVESAYETLIPYFIGPMLTTAPNVKLDSYVWTEKSMQDLQQGQIDFGISGRDLHPL
SDFQVDRLPEGIAYQTLFTDQQVCLVREDHPLMAALTSAQWKLPLYLDMAHVQVRCEGSDWWALDYFLADLGHRRRISTT
VPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKLLPLPFEFMPMAYVLLWHQRNDEDQGHKWIRETICQSVAKLFTPA
EML

Sequences:

>Translated_323_residues
MNIDNLARIDLNLLVILKVLLEEQSVTRAASRLHISQSALSKSLNRLRENLDDPLFQRTAHGLKPTAHALILGQKLPNIL
QDLYQLTQPPTFNPASSNRQFSFAMVESAYETLIPYFIGPMLTTAPNVKLDSYVWTEKSMQDLQQGQIDFGISGRDLHPL
SDFQVDRLPEGIAYQTLFTDQQVCLVREDHPLMAALTSAQWKLPLYLDMAHVQVRCEGSDWWALDYFLADLGHRRRISTT
VPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKLLPLPFEFMPMAYVLLWHQRNDEDQGHKWIRETICQSVAKLFTPA
EML
>Mature_323_residues
MNIDNLARIDLNLLVILKVLLEEQSVTRAASRLHISQSALSKSLNRLRENLDDPLFQRTAHGLKPTAHALILGQKLPNIL
QDLYQLTQPPTFNPASSNRQFSFAMVESAYETLIPYFIGPMLTTAPNVKLDSYVWTEKSMQDLQQGQIDFGISGRDLHPL
SDFQVDRLPEGIAYQTLFTDQQVCLVREDHPLMAALTSAQWKLPLYLDMAHVQVRCEGSDWWALDYFLADLGHRRRISTT
VPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKLLPLPFEFMPMAYVLLWHQRNDEDQGHKWIRETICQSVAKLFTPA
EML

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=297, Percent_Identity=31.986531986532, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI87081684, Length=317, Percent_Identity=27.1293375394322, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081766, Length=275, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786820, Length=84, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=285, Percent_Identity=27.0175438596491, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36841; Mature: 36841

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDNLARIDLNLLVILKVLLEEQSVTRAASRLHISQSALSKSLNRLRENLDDPLFQRTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HGLKPTAHALILGQKLPNILQDLYQLTQPPTFNPASSNRQFSFAMVESAYETLIPYFIGP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MLTTAPNVKLDSYVWTEKSMQDLQQGQIDFGISGRDLHPLSDFQVDRLPEGIAYQTLFTD
HHHCCCCCEECCEEECHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHCCCCCEEEEEECC
QQVCLVREDHPLMAALTSAQWKLPLYLDMAHVQVRCEGSDWWALDYFLADLGHRRRISTT
CCEEEEECCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEHHHHHHHHCCCCCCCCCC
VPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKLLPLPFEFMPMAYVLLWHQRNDEDQ
CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCHH
GHKWIRETICQSVAKLFTPAEML
HHHHHHHHHHHHHHHHCCCHHCC
>Mature Secondary Structure
MNIDNLARIDLNLLVILKVLLEEQSVTRAASRLHISQSALSKSLNRLRENLDDPLFQRTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HGLKPTAHALILGQKLPNILQDLYQLTQPPTFNPASSNRQFSFAMVESAYETLIPYFIGP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MLTTAPNVKLDSYVWTEKSMQDLQQGQIDFGISGRDLHPLSDFQVDRLPEGIAYQTLFTD
HHHCCCCCEECCEEECHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHCCCCCEEEEEECC
QQVCLVREDHPLMAALTSAQWKLPLYLDMAHVQVRCEGSDWWALDYFLADLGHRRRISTT
CCEEEEECCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEHHHHHHHHCCCCCCCCCC
VPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKLLPLPFEFMPMAYVLLWHQRNDEDQ
CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCHH
GHKWIRETICQSVAKLFTPAEML
HHHHHHHHHHHHHHHHCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA