| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is trxC [H]
Identifier: 160877133
GI number: 160877133
Start: 4739185
End: 4739697
Strand: Direct
Name: trxC [H]
Synonym: Sbal195_4029
Alternate gene names: 160877133
Gene position: 4739185-4739697 (Clockwise)
Preceding gene: 160877130
Following gene: 160877135
Centisome position: 88.63
GC content: 45.81
Gene sequence:
>513_bases ATGGGCGAGATAATCATCACTCAGCCTTTAAATAATCGTCCGTTAGCCCAATATATTAGCCGTATAGACATTTTATTTTG GAGCTTTGCCATGATTATTGCCTGCCCCCATTGCGATACATTAAACCGCGTTCCCGATGAGCGTGTAAACCAGCAACCTA CTTGCGGTAAATGTAAGCTCAGTGTCTTTACGGCTGCGCCGATTGAACTCACTAGCGCAAACTTTGCCAACCATGCCAAA AAATCTGAGCTTCCCCTAGTCGTTGATTTTTGGGCCAGCTGGTGTGGCCCCTGTAAAAGTTTTGCCCCGGTATTTTCCGC GGCAGCTAAGACGTGGGAGCCGCAATTTCGCTTCGGTAAAATCAATACTGAAGAACAACAAGCCCTTGCGGCGCAATTTA ATATTCGCTCGATTCCCACTCTTATGATTTTCAAGCAAGGGAAAATACTCGCACAGCAAGCGGGCGCTTTACCTCAGTCA GCCTTAAATCAATGGTTAAAAAGCCATAGTTAA
Upstream 100 bases:
>100_bases ACTTTGTGCAGGATTTTATCACCGACGACCACACTTGTCGGCGCTATTGCCACATTTCTGCGGCTCGGTTCACTGCTTTA TTCTTGAGAATAAGTTCACC
Downstream 100 bases:
>100_bases TCGCAGATAACTATTTCGCTCCCATAAAAATACCCAGACTCGCTGGGTATTTTGTTTTACGTGGATCTCAATCTACTGAC ATCAGATATCCCAAAAAACA
Product: thioredoxin
Products: NA
Alternate protein names: Trx-2; Protein-disulfide reductase [H]
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MGEIIITQPLNNRPLAQYISRIDILFWSFAMIIACPHCDTLNRVPDERVNQQPTCGKCKLSVFTAAPIELTSANFANHAK KSELPLVVDFWASWCGPCKSFAPVFSAAAKTWEPQFRFGKINTEEQQALAAQFNIRSIPTLMIFKQGKILAQQAGALPQS ALNQWLKSHS
Sequences:
>Translated_170_residues MGEIIITQPLNNRPLAQYISRIDILFWSFAMIIACPHCDTLNRVPDERVNQQPTCGKCKLSVFTAAPIELTSANFANHAK KSELPLVVDFWASWCGPCKSFAPVFSAAAKTWEPQFRFGKINTEEQQALAAQFNIRSIPTLMIFKQGKILAQQAGALPQS ALNQWLKSHS >Mature_169_residues GEIIITQPLNNRPLAQYISRIDILFWSFAMIIACPHCDTLNRVPDERVNQQPTCGKCKLSVFTAAPIELTSANFANHAKK SELPLVVDFWASWCGPCKSFAPVFSAAAKTWEPQFRFGKINTEEQQALAAQFNIRSIPTLMIFKQGKILAQQAGALPQSA LNQWLKSHS
Specific function: Efficient electron donor for the essential enzyme ribonucleotide reductase. Is also able to reduce the interchain disulfide bridges of insulin [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788936, Length=138, Percent_Identity=41.304347826087, Blast_Score=137, Evalue=3e-34, Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=36.2745098039216, Blast_Score=91, Evalue=3e-20, Organism=Caenorhabditis elegans, GI212646193, Length=108, Percent_Identity=28.7037037037037, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17554386, Length=104, Percent_Identity=34.6153846153846, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17549970, Length=81, Percent_Identity=34.5679012345679, Blast_Score=63, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323072, Length=100, Percent_Identity=35, Blast_Score=69, Evalue=5e-13, Organism=Drosophila melanogaster, GI28573567, Length=96, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI19921434, Length=81, Percent_Identity=35.8024691358025, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: =1.8.1.8 [H]
Molecular weight: Translated: 18977; Mature: 18846
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEIIITQPLNNRPLAQYISRIDILFWSFAMIIACPHCDTLNRVPDERVNQQPTCGKCKL CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCEEE SVFTAAPIELTSANFANHAKKSELPLVVDFWASWCGPCKSFAPVFSAAAKTWEPQFRFGK EEEEECCEEECCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEECC INTEEQQALAAQFNIRSIPTLMIFKQGKILAQQAGALPQSALNQWLKSHS CCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure GEIIITQPLNNRPLAQYISRIDILFWSFAMIIACPHCDTLNRVPDERVNQQPTCGKCKL CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCEEE SVFTAAPIELTSANFANHAKKSELPLVVDFWASWCGPCKSFAPVFSAAAKTWEPQFRFGK EEEEECCEEECCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEECC INTEEQQALAAQFNIRSIPTLMIFKQGKILAQQAGALPQSALNQWLKSHS CCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]