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The map label for this gene is ycaD [H]

Identifier: 160877135

GI number: 160877135

Start: 4741790

End: 4742956

Strand: Direct

Name: ycaD [H]

Synonym: Sbal195_4031

Alternate gene names: 160877135

Gene position: 4741790-4742956 (Clockwise)

Preceding gene: 160877133

Following gene: 160877136

Centisome position: 88.68

GC content: 45.16

Gene sequence:

>1167_bases
GTGGAAAAAATTGCCTTAACTCAGTCGGCTCAAAAGCCCAGTCTTTTCGTCCCCGTCGCAGGGTTAAGTTTGTTTGCTTT
GGCATCTGGCTACTTGATGAGCTTAATCCCACTGTCACTCACTTTTTTCGAACTCAGCACTTCACTTGCCCCATTACTTG
CGAGTATTTTTTATTTAGGTTTACTGCTGGGAGCGCCTTGTATTGCTCCCATTGTTACCCGTATCGGTCACAGTAAAGCC
TTTATCCTTTTTTTGAATATCCTGCTTTGCAGCGTTGTCGCTATGATATTAATCCCCAAAAGTGGCGTCTGGTTAGCCTC
TCGACTCGTCGCGGGATTTGCGGTTGCAGGGATTTTTGTGGTGGTTGAATCATGGCTATTAATGGCCGATACCCAAAAGC
AACGCGCTAAGCGGCTTGGGCTTTACATGACAGCGCTTTATGGCGGTACTGCCATAGGACAATTAGCCATAGATTATTTA
GGTACAAAGGGCAATCTACCTTACCTAGTGGTCATGGGATTATTAGCCGCGGCAAGTTTACCTGCGTTATTGGTAAAACG
CGGTCAACCTCAGGTAAGCGAACAACAGTCAATGTCATTGTCTGCACTAAAAAACCTAAGTCAGCCTGCCATTATGGGAT
GCTTAGTCTCTGGATTATTGCTCGGCCCTATCTATGGTTTACTGCCCATTTATGTGGCACTGGATATGGGGCTTGATCAG
CAAACAGGACAATTTATGGCCCTCATCATAGTGGGTGGCATGCTAGTACAGCCTTTAGTCAGTTATTTATCTCCTATATT
TAACAAAAGTGGCTTGATAGTGAGCTTTAGCCTACTGGGCATCGCGGCATTATTACTACTCAGTCAGCATTCAAGTATGA
CGCTGATTATTGGATTTCTATTGCTTGGCGCCAGCGCTTTTGCCCTTTACCCGATAGCAATCAGTCTAGCTTGTGACAAC
TTGCCTGCTAGCCAAATGGTTTCAGTGGCGCAAGTGATGCTGCTGAGCTATTCGGTGGGGTCAGTGATAGGGCCATTAGT
TGCCAGCAGCTTTGGCCAAACGGAGTTCGGCTTACTCATTTATTTAGGCATATGCTGTATTCTGAGCAGTATTTACATTT
TTGCTCAATTGCTTATTAACACTAAGCCCAGTTTTTCTTCGCCTTAA

Upstream 100 bases:

>100_bases
ACAGTCAATCTAACTCACTTTACCCTGTCAGCGATCCAGCCTAAAGTCGCGACCGCAACCCTGCCTAGCGTATAATATTT
GTCTGTTTTCGGAACCGCCC

Downstream 100 bases:

>100_bases
AAGTCCCCATAAAACACCTTGCACTGCTACTTAATAGACAGCTACTTAATTGGAAGCGACTTAATAGACAGGCACTCAAT
AAGCCGCCACTAAATGAACG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MEKIALTQSAQKPSLFVPVAGLSLFALASGYLMSLIPLSLTFFELSTSLAPLLASIFYLGLLLGAPCIAPIVTRIGHSKA
FILFLNILLCSVVAMILIPKSGVWLASRLVAGFAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAIDYL
GTKGNLPYLVVMGLLAAASLPALLVKRGQPQVSEQQSMSLSALKNLSQPAIMGCLVSGLLLGPIYGLLPIYVALDMGLDQ
QTGQFMALIIVGGMLVQPLVSYLSPIFNKSGLIVSFSLLGIAALLLLSQHSSMTLIIGFLLLGASAFALYPIAISLACDN
LPASQMVSVAQVMLLSYSVGSVIGPLVASSFGQTEFGLLIYLGICCILSSIYIFAQLLINTKPSFSSP

Sequences:

>Translated_388_residues
MEKIALTQSAQKPSLFVPVAGLSLFALASGYLMSLIPLSLTFFELSTSLAPLLASIFYLGLLLGAPCIAPIVTRIGHSKA
FILFLNILLCSVVAMILIPKSGVWLASRLVAGFAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAIDYL
GTKGNLPYLVVMGLLAAASLPALLVKRGQPQVSEQQSMSLSALKNLSQPAIMGCLVSGLLLGPIYGLLPIYVALDMGLDQ
QTGQFMALIIVGGMLVQPLVSYLSPIFNKSGLIVSFSLLGIAALLLLSQHSSMTLIIGFLLLGASAFALYPIAISLACDN
LPASQMVSVAQVMLLSYSVGSVIGPLVASSFGQTEFGLLIYLGICCILSSIYIFAQLLINTKPSFSSP
>Mature_388_residues
MEKIALTQSAQKPSLFVPVAGLSLFALASGYLMSLIPLSLTFFELSTSLAPLLASIFYLGLLLGAPCIAPIVTRIGHSKA
FILFLNILLCSVVAMILIPKSGVWLASRLVAGFAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAIDYL
GTKGNLPYLVVMGLLAAASLPALLVKRGQPQVSEQQSMSLSALKNLSQPAIMGCLVSGLLLGPIYGLLPIYVALDMGLDQ
QTGQFMALIIVGGMLVQPLVSYLSPIFNKSGLIVSFSLLGIAALLLLSQHSSMTLIIGFLLLGASAFALYPIAISLACDN
LPASQMVSVAQVMLLSYSVGSVIGPLVASSFGQTEFGLLIYLGICCILSSIYIFAQLLINTKPSFSSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=319, Percent_Identity=32.6018808777429, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40875; Mature: 40875

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIALTQSAQKPSLFVPVAGLSLFALASGYLMSLIPLSLTFFELSTSLAPLLASIFYLG
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLGAPCIAPIVTRIGHSKAFILFLNILLCSVVAMILIPKSGVWLASRLVAGFAVAGIFV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAIDYLGTKGNLPYLVVMGLLAAASL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
PALLVKRGQPQVSEQQSMSLSALKNLSQPAIMGCLVSGLLLGPIYGLLPIYVALDMGLDQ
HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QTGQFMALIIVGGMLVQPLVSYLSPIFNKSGLIVSFSLLGIAALLLLSQHSSMTLIIGFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LLGASAFALYPIAISLACDNLPASQMVSVAQVMLLSYSVGSVIGPLVASSFGQTEFGLLI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YLGICCILSSIYIFAQLLINTKPSFSSP
HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEKIALTQSAQKPSLFVPVAGLSLFALASGYLMSLIPLSLTFFELSTSLAPLLASIFYLG
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLGAPCIAPIVTRIGHSKAFILFLNILLCSVVAMILIPKSGVWLASRLVAGFAVAGIFV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAIDYLGTKGNLPYLVVMGLLAAASL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
PALLVKRGQPQVSEQQSMSLSALKNLSQPAIMGCLVSGLLLGPIYGLLPIYVALDMGLDQ
HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QTGQFMALIIVGGMLVQPLVSYLSPIFNKSGLIVSFSLLGIAALLLLSQHSSMTLIIGFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LLGASAFALYPIAISLACDNLPASQMVSVAQVMLLSYSVGSVIGPLVASSFGQTEFGLLI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YLGICCILSSIYIFAQLLINTKPSFSSP
HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA