| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is btuB [H]
Identifier: 160876857
GI number: 160876857
Start: 4419958
End: 4422543
Strand: Reverse
Name: btuB [H]
Synonym: Sbal195_3753
Alternate gene names: 160876857
Gene position: 4422543-4419958 (Counterclockwise)
Preceding gene: 160876862
Following gene: 160876856
Centisome position: 82.71
GC content: 45.63
Gene sequence:
>2586_bases ATGAACAGACCTCAGATTCTACCCAGTGCTTGTGCCATCGCGATTGCTTTAGCATTTGCGCCAACAATAGCCCATGCTGC CGATAAAGGCGCAGAAAAAGTTGAACGTATTGAAGTGACGGGTTCTCGTATTAAACGTACAGATATCGAAGGCCCTTCCC CGATCCAATCGATCAGCAAAGACGATATTGCTAATATGGGATTCGATAACCTACAGCAATTGCTCGAACGTATGCCTGCG AACGGTGCTGGTGCGTTTTCTACCCGTGGTAATAGCCAAGATTCAACTGCCAACGGTGGCGCGTCTATCAGTTTGCGTGG TTTAGGTCCTGATGCGACCTTAGTGTTGATTAACGGTCGTCGGGTTGCTGCGAGTGCTTTTGCTGAAGGTATTACTAATT CTTTCGTTGATATCAATAATATCCCTGTTTCAGCGATCGAACGTATCGACATACTCAAGGACGGTGCATCGGCTATTTAT GGCTCTGATGCGATTGCCGGTGTGGTCAACATTATCCTGAAGAAAGACATTGAGGGTATTGAAGTCAATCTCGGCTACGG TGATGCTTCAGGTACGGGTTACGATGAAACCACTGCGAACATGGTTTGGGGGATGAAGTCTGATAAGGGCAGTGCCTCCG TTATTCTCGATTATTTTAAAAATGGTACCTTAGCTGCGACTGATTTAGGCCGTTTCGGCAGTGCAGATCAGACTCCTTAT GGCGGTGAGGATTTCCGTTCTTCCCGTGGTTTTCCTGGTTATTTTTATGTTGATGGGGTGAAAACCATAGATCCAGCCTG TCCACCTGATCGGGCGACGCCAAGCGGCAGCTGTGTATTTGATTATGGGCCATATAACCTTGTTATTCCTTCTGCAGAAC GAGTGGGAGCTATTGGGCAATTCGAATATCATTTCAATGATGATTTAACTGCTTTCCTTGAATTAGCTGCCCAGCACAAC ACGTCGGAAGCGGGCGGTGCACCAACACCTCTTGATGAGGATGCAGGCTTAACCGTACCAGGAACTCACCCAAATAACCC TTGGGGGAAAGATATTGAAATTGGTCGCTTCCGCACCGTTGATGCGGGTGCGCGTCGTTGGGATATCGAGTCTGATACTC TTCGTTTAGTCGCAGGTTTGCGTGGCGTAGTTAAAGATTGGGACTGGGAAGCTTCGGTGCAAAAAGGTCGCAGTGAGTCC ACTCAAACGGGGGATCGCAGCCAAGGTTGGGTCAGAACCGATTATTTACAACGTGAAATCGATGCGGGTCGCTATAATCC TTTCGGTGGCACCATGAACTCCCAAGATGTCATTGATGACATTACCACTAGTTTAGTGCGCCAAGGTTTGTCAAACATGA CTTCCTATGCAGCTAACATTTCAGGTCAAGCATTTACCCTTGCTGGTCGCGATATTATGATGGCGGCTGGAGCTGAATAT CGTGAAGAAGATGTCAGCGATGTGCCCGATGAACAGTTCCAACGTGGATTGATTTTTGGTACTGAAGCAGTCTCTGCGGC GGCATCACGTGAGCAATATGCAGCTTATGTTGAATTATCTATTCCGGTAACGGATAACTTCGAGCTACAACTTGCTGGTC GTTATGATCACTATAGTGATTTTGGTTCAACGACTAACCCTAAAGTTGCCTTCCAATGGGGAGTGACTGACGAGATAACG GCGCGTGCTTCTTGGTCTACGGGTTTCCGTGCACCTTCTTTAGCACAAATAGGTCTTGGTCCATCGCGTGAAAGTAGTTT CTTCATTGATACTTACCGCTGCGCTGCTGATAGTGTTGATTGTGAAGCTTTAGATTACAACACTGAATTTGAAGGCAACT CGGAGCTGGATGCTGAGGAATCCGAAACTTGGAACGTCGGTATGATTTGGGCGCCAAGCCAGAAATTCGATGTTGGTTTT GATATCTATAGCATTACACAAGATAACAAAATCGATAAACAGCCGTTAGGCGATATCTATACCGCAAATTGTAATGATCA AAACAGCACTGTATGTGAGCGTTTAGCTCCACAGGTGGGTCAGACTTTAGGTCCAATCAGTATCATCCATTCAAGCTTTA TCAACCTAAGCTCACAAGATGTGCAAGGGATGGATGTTTCGAGTCATTATGGCGTTGAGTTGGATAGCTATGGTGATCTG AAATTTGGACTTGAGTACAGTTATTTACATAGTTTCGAAAAAGATGGCCTAGATTACACCGGTGAGTACAAGTTCCCTCA ACATCGCTGGTTACTTACTACTAACTGGACTATGGATAACTTTGCCGCCAACATTAATCTGAGTTATATCGGCGAGTTTG AAGATACACCAGATATCAATTTTGATGGCGTCCTCGACTTCGAAAGCAACAAGTCTCGTATGGTTGATGCTCAAATCTTA GTCGACATGTCAGGTACTTATCGCTTCAATGAAATGTTCAAACTGACATTGGGTGTAAACAACGTATTTGACGAAGAGCC ACCATTTGCGATCGGTGACGGTGATACCGACCTTTACGGCTATGTTATTTCAGTACATAACCCTATGGGTCGCTACATCT ACACTAAACTCACTATGAACTTCTAA
Upstream 100 bases:
>100_bases ATTGACTTTGGTTTGTAACTCATTACCTTGTGTATTGTTAATTTATGGTTTTCTAATGGTTAATATAATTTTAATAAAAT AGATAAAACAAGGGATATGT
Downstream 100 bases:
>100_bases TATTAAGCCTACGTGCTTTATATCAAAGTGTAGTGAAATCGAAACGGCGCATTAAGCGCCGTTTTTTATGGGCAGATTTG CACTAACGCAAACTCAGTGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MNRPQILPSACAIAIALAFAPTIAHAADKGAEKVERIEVTGSRIKRTDIEGPSPIQSISKDDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIILKKDIEGIEVNLGYGDASGTGYDETTANMVWGMKSDKGSASVILDYFKNGTLAATDLGRFGSADQTPY GGEDFRSSRGFPGYFYVDGVKTIDPACPPDRATPSGSCVFDYGPYNLVIPSAERVGAIGQFEYHFNDDLTAFLELAAQHN TSEAGGAPTPLDEDAGLTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGVVKDWDWEASVQKGRSES TQTGDRSQGWVRTDYLQREIDAGRYNPFGGTMNSQDVIDDITTSLVRQGLSNMTSYAANISGQAFTLAGRDIMMAAGAEY REEDVSDVPDEQFQRGLIFGTEAVSAAASREQYAAYVELSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGVTDEIT ARASWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADSVDCEALDYNTEFEGNSELDAEESETWNVGMIWAPSQKFDVGF DIYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQVGQTLGPISIIHSSFINLSSQDVQGMDVSSHYGVELDSYGDL KFGLEYSYLHSFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANINLSYIGEFEDTPDINFDGVLDFESNKSRMVDAQIL VDMSGTYRFNEMFKLTLGVNNVFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF
Sequences:
>Translated_861_residues MNRPQILPSACAIAIALAFAPTIAHAADKGAEKVERIEVTGSRIKRTDIEGPSPIQSISKDDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIILKKDIEGIEVNLGYGDASGTGYDETTANMVWGMKSDKGSASVILDYFKNGTLAATDLGRFGSADQTPY GGEDFRSSRGFPGYFYVDGVKTIDPACPPDRATPSGSCVFDYGPYNLVIPSAERVGAIGQFEYHFNDDLTAFLELAAQHN TSEAGGAPTPLDEDAGLTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGVVKDWDWEASVQKGRSES TQTGDRSQGWVRTDYLQREIDAGRYNPFGGTMNSQDVIDDITTSLVRQGLSNMTSYAANISGQAFTLAGRDIMMAAGAEY REEDVSDVPDEQFQRGLIFGTEAVSAAASREQYAAYVELSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGVTDEIT ARASWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADSVDCEALDYNTEFEGNSELDAEESETWNVGMIWAPSQKFDVGF DIYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQVGQTLGPISIIHSSFINLSSQDVQGMDVSSHYGVELDSYGDL KFGLEYSYLHSFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANINLSYIGEFEDTPDINFDGVLDFESNKSRMVDAQIL VDMSGTYRFNEMFKLTLGVNNVFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF >Mature_861_residues MNRPQILPSACAIAIALAFAPTIAHAADKGAEKVERIEVTGSRIKRTDIEGPSPIQSISKDDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIILKKDIEGIEVNLGYGDASGTGYDETTANMVWGMKSDKGSASVILDYFKNGTLAATDLGRFGSADQTPY GGEDFRSSRGFPGYFYVDGVKTIDPACPPDRATPSGSCVFDYGPYNLVIPSAERVGAIGQFEYHFNDDLTAFLELAAQHN TSEAGGAPTPLDEDAGLTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGVVKDWDWEASVQKGRSES TQTGDRSQGWVRTDYLQREIDAGRYNPFGGTMNSQDVIDDITTSLVRQGLSNMTSYAANISGQAFTLAGRDIMMAAGAEY REEDVSDVPDEQFQRGLIFGTEAVSAAASREQYAAYVELSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGVTDEIT ARASWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADSVDCEALDYNTEFEGNSELDAEESETWNVGMIWAPSQKFDVGF DIYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQVGQTLGPISIIHSSFINLSSQDVQGMDVSSHYGVELDSYGDL KFGLEYSYLHSFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANINLSYIGEFEDTPDINFDGVLDFESNKSRMVDAQIL VDMSGTYRFNEMFKLTLGVNNVFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=242, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788478, Length=172, Percent_Identity=34.3023255813954, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1786798, Length=133, Percent_Identity=31.5789473684211, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93925; Mature: 93925
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRPQILPSACAIAIALAFAPTIAHAADKGAEKVERIEVTGSRIKRTDIEGPSPIQSISK CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEECCCCCCCHHHHCCH DDIANMGFDNLQQLLERMPANGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGR HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC RVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIILKKDIEGI CHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCCE EVNLGYGDASGTGYDETTANMVWGMKSDKGSASVILDYFKNGTLAATDLGRFGSADQTPY EEEECCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC GGEDFRSSRGFPGYFYVDGVKTIDPACPPDRATPSGSCVFDYGPYNLVIPSAERVGAIGQ CCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCHHHHCCCEE FEYHFNDDLTAFLELAAQHNTSEAGGAPTPLDEDAGLTVPGTHPNNPWGKDIEIGRFRTV EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCEEEEE DAGARRWDIESDTLRLVAGLRGVVKDWDWEASVQKGRSESTQTGDRSQGWVRTDYLQREI CCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH DAGRYNPFGGTMNSQDVIDDITTSLVRQGLSNMTSYAANISGQAFTLAGRDIMMAAGAEY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCH REEDVSDVPDEQFQRGLIFGTEAVSAAASREQYAAYVELSIPVTDNFELQLAGRYDHYSD HHHHHHCCCHHHHHCCEEEEHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEECCCCHHH FGSTTNPKVAFQWGVTDEITARASWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADSVD CCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCC CEALDYNTEFEGNSELDAEESETWNVGMIWAPSQKFDVGFDIYSITQDNKIDKQPLGDIY CEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE TANCNDQNSTVCERLAPQVGQTLGPISIIHSSFINLSSQDVQGMDVSSHYGVELDSYGDL ECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCE KFGLEYSYLHSFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANINLSYIGEFEDTPDIN EECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHEEEEEEEEEEECCCCCCCCC FDGVLDFESNKSRMVDAQILVDMSGTYRFNEMFKLTLGVNNVFDEEPPFAIGDGDTDLYG CCEEEEECCCCCEEEEEEEEEECCCCEEECEEEEEEECCCCCCCCCCCEEECCCCCCEEE YVISVHNPMGRYIYTKLTMNF EEEEECCCCCCEEEEEEEECC >Mature Secondary Structure MNRPQILPSACAIAIALAFAPTIAHAADKGAEKVERIEVTGSRIKRTDIEGPSPIQSISK CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEECCCCCCCHHHHCCH DDIANMGFDNLQQLLERMPANGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGR HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC RVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIILKKDIEGI CHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCCE EVNLGYGDASGTGYDETTANMVWGMKSDKGSASVILDYFKNGTLAATDLGRFGSADQTPY EEEECCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC GGEDFRSSRGFPGYFYVDGVKTIDPACPPDRATPSGSCVFDYGPYNLVIPSAERVGAIGQ CCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCHHHHCCCEE FEYHFNDDLTAFLELAAQHNTSEAGGAPTPLDEDAGLTVPGTHPNNPWGKDIEIGRFRTV EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCEEEEE DAGARRWDIESDTLRLVAGLRGVVKDWDWEASVQKGRSESTQTGDRSQGWVRTDYLQREI CCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH DAGRYNPFGGTMNSQDVIDDITTSLVRQGLSNMTSYAANISGQAFTLAGRDIMMAAGAEY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCH REEDVSDVPDEQFQRGLIFGTEAVSAAASREQYAAYVELSIPVTDNFELQLAGRYDHYSD HHHHHHCCCHHHHHCCEEEEHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEECCCCHHH FGSTTNPKVAFQWGVTDEITARASWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADSVD CCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCC CEALDYNTEFEGNSELDAEESETWNVGMIWAPSQKFDVGFDIYSITQDNKIDKQPLGDIY CEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE TANCNDQNSTVCERLAPQVGQTLGPISIIHSSFINLSSQDVQGMDVSSHYGVELDSYGDL ECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCE KFGLEYSYLHSFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANINLSYIGEFEDTPDIN EECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHEEEEEEEEEEECCCCCCCCC FDGVLDFESNKSRMVDAQILVDMSGTYRFNEMFKLTLGVNNVFDEEPPFAIGDGDTDLYG CCEEEEECCCCCEEEEEEEEEECCCCEEECEEEEEEECCCCCCCCCCCEEECCCCCCEEE YVISVHNPMGRYIYTKLTMNF EEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA